Hb_039074_010

Information

Type -
Description -
Location Contig39074: 48-1399
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039074_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_003371_190 0.1294254575 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
3 Hb_059741_010 0.1351317139 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
4 Hb_000244_260 0.1420830121 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
5 Hb_030565_110 0.1437544222 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
6 Hb_000679_040 0.1519313704 - - Cellulose synthase 1 [Theobroma cacao]
7 Hb_011310_050 0.1537628638 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
8 Hb_001437_140 0.1559163743 - - -
9 Hb_168180_010 0.1588058864 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002072_010 0.1628621168 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001105_130 0.1682525334 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
12 Hb_000494_030 0.1730112811 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
13 Hb_147218_010 0.1766642452 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_009535_030 0.1767701643 - - CP2 [Hevea brasiliensis]
15 Hb_001210_040 0.1788193197 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
16 Hb_003470_050 0.178824417 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_001216_110 0.1809211778 - - PREDICTED: protein GPR107-like [Jatropha curcas]
18 Hb_000473_030 0.1829450941 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
19 Hb_000254_070 0.1829667266 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
20 Hb_085187_010 0.183768324 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_039074_010 Hb_039074_010 Hb_003371_190 Hb_003371_190 Hb_039074_010--Hb_003371_190 Hb_059741_010 Hb_059741_010 Hb_039074_010--Hb_059741_010 Hb_000244_260 Hb_000244_260 Hb_039074_010--Hb_000244_260 Hb_030565_110 Hb_030565_110 Hb_039074_010--Hb_030565_110 Hb_000679_040 Hb_000679_040 Hb_039074_010--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_039074_010--Hb_011310_050 Hb_003371_190--Hb_030565_110 Hb_003371_190--Hb_000679_040 Hb_002072_010 Hb_002072_010 Hb_003371_190--Hb_002072_010 Hb_010381_020 Hb_010381_020 Hb_003371_190--Hb_010381_020 Hb_009535_030 Hb_009535_030 Hb_003371_190--Hb_009535_030 Hb_000254_070 Hb_000254_070 Hb_003371_190--Hb_000254_070 Hb_059741_010--Hb_011310_050 Hb_059741_010--Hb_000679_040 Hb_001216_110 Hb_001216_110 Hb_059741_010--Hb_001216_110 Hb_059741_010--Hb_000244_260 Hb_177343_010 Hb_177343_010 Hb_059741_010--Hb_177343_010 Hb_001210_040 Hb_001210_040 Hb_059741_010--Hb_001210_040 Hb_000244_260--Hb_002072_010 Hb_000244_260--Hb_000254_070 Hb_000244_260--Hb_011310_050 Hb_000244_260--Hb_030565_110 Hb_003058_200 Hb_003058_200 Hb_000244_260--Hb_003058_200 Hb_002026_070 Hb_002026_070 Hb_000244_260--Hb_002026_070 Hb_030565_110--Hb_002072_010 Hb_000003_310 Hb_000003_310 Hb_030565_110--Hb_000003_310 Hb_030565_110--Hb_000254_070 Hb_002367_110 Hb_002367_110 Hb_030565_110--Hb_002367_110 Hb_000679_040--Hb_001216_110 Hb_000679_040--Hb_011310_050 Hb_001195_310 Hb_001195_310 Hb_000679_040--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_000679_040--Hb_001969_140 Hb_000679_040--Hb_000254_070 Hb_021576_070 Hb_021576_070 Hb_000679_040--Hb_021576_070 Hb_000167_040 Hb_000167_040 Hb_011310_050--Hb_000167_040 Hb_011310_050--Hb_001969_140 Hb_011310_050--Hb_001195_310 Hb_011310_050--Hb_001216_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.246516 0.494602 0.298636 1.94112 0.317025 0.252731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0352309 0.0277154 0.518505 1.35174 1.09655

CAGE analysis