Hb_011310_050

Information

Type -
Description -
Location Contig11310: 11930-19061
Sequence    

Annotation

kegg
ID tcc:TCM_038394
description Cellulose synthase 1
nr
ID XP_012076601.1
description PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
swissprot
ID O48946
description Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1
trembl
ID A0A067KBT7
description Cellulose synthase OS=Jatropha curcas GN=JCGZ_07183 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase a catalytic subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03901: 11945-19505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_050 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
2 Hb_000167_040 0.0664393098 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
3 Hb_000679_040 0.0688201416 - - Cellulose synthase 1 [Theobroma cacao]
4 Hb_001969_140 0.0865931431 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
5 Hb_001195_310 0.0919495059 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001216_110 0.102453533 - - PREDICTED: protein GPR107-like [Jatropha curcas]
7 Hb_059741_010 0.1033119359 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
8 Hb_001105_130 0.1052644429 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
9 Hb_000244_260 0.1053801194 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
10 Hb_010381_020 0.1141470043 - - Endosomal P24A protein precursor, putative [Ricinus communis]
11 Hb_000254_070 0.119235021 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
12 Hb_000120_740 0.1222655974 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
13 Hb_000997_070 0.1224610689 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
14 Hb_003371_190 0.123334118 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
15 Hb_007317_020 0.1252677201 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
16 Hb_021576_070 0.1268368631 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
17 Hb_000445_370 0.1281184489 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
18 Hb_004326_010 0.1318832521 - - cationic amino acid transporter, putative [Ricinus communis]
19 Hb_000638_060 0.1321779823 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
20 Hb_002603_040 0.1324981636 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_011310_050 Hb_011310_050 Hb_000167_040 Hb_000167_040 Hb_011310_050--Hb_000167_040 Hb_000679_040 Hb_000679_040 Hb_011310_050--Hb_000679_040 Hb_001969_140 Hb_001969_140 Hb_011310_050--Hb_001969_140 Hb_001195_310 Hb_001195_310 Hb_011310_050--Hb_001195_310 Hb_001216_110 Hb_001216_110 Hb_011310_050--Hb_001216_110 Hb_059741_010 Hb_059741_010 Hb_011310_050--Hb_059741_010 Hb_000167_040--Hb_001195_310 Hb_000167_040--Hb_001969_140 Hb_000997_070 Hb_000997_070 Hb_000167_040--Hb_000997_070 Hb_000167_040--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_000167_040--Hb_010381_020 Hb_000679_040--Hb_001216_110 Hb_000679_040--Hb_001195_310 Hb_000679_040--Hb_001969_140 Hb_000254_070 Hb_000254_070 Hb_000679_040--Hb_000254_070 Hb_021576_070 Hb_021576_070 Hb_000679_040--Hb_021576_070 Hb_001969_140--Hb_001195_310 Hb_001969_140--Hb_001216_110 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_020586_010 Hb_020586_010 Hb_001195_310--Hb_020586_010 Hb_001195_310--Hb_000997_070 Hb_028639_030 Hb_028639_030 Hb_001216_110--Hb_028639_030 Hb_001216_110--Hb_021576_070 Hb_002129_020 Hb_002129_020 Hb_001216_110--Hb_002129_020 Hb_001216_110--Hb_001195_310 Hb_059741_010--Hb_000679_040 Hb_059741_010--Hb_001216_110 Hb_000244_260 Hb_000244_260 Hb_059741_010--Hb_000244_260 Hb_177343_010 Hb_177343_010 Hb_059741_010--Hb_177343_010 Hb_001210_040 Hb_001210_040 Hb_059741_010--Hb_001210_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.7344 18.0065 32.1033 76.2179 13.7388 10.6136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62682 2.09172 12.9682 36.3936 54.9003

CAGE analysis