Hb_069659_010

Information

Type -
Description -
Location Contig69659: 148-1419
Sequence    

Annotation

kegg
ID mdm:103426476
description disease resistance protein RGA2-like
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069659_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_002687_020 0.138865841 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004409_030 0.1535144443 - - Glutamine synthetase 1,4 [Theobroma cacao]
4 Hb_000442_130 0.1892859734 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001832_210 0.1924538181 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
6 Hb_000000_110 0.1988732895 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
7 Hb_001004_120 0.2023157272 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
8 Hb_001538_020 0.2030397099 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
9 Hb_106136_010 0.203614219 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_003929_190 0.2050799489 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
11 Hb_048643_010 0.205732952 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_005618_130 0.2065796883 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_014497_040 0.2088923193 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
14 Hb_000012_400 0.209782268 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
15 Hb_002316_170 0.2099897984 - - purine permease, putative [Ricinus communis]
16 Hb_002539_050 0.2104439261 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_160405_010 0.2107352622 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_000220_080 0.2107953983 - - kinase, putative [Ricinus communis]
19 Hb_004531_110 0.2108221572 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
20 Hb_001195_420 0.2153396804 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_069659_010 Hb_069659_010 Hb_002687_020 Hb_002687_020 Hb_069659_010--Hb_002687_020 Hb_004409_030 Hb_004409_030 Hb_069659_010--Hb_004409_030 Hb_000442_130 Hb_000442_130 Hb_069659_010--Hb_000442_130 Hb_001832_210 Hb_001832_210 Hb_069659_010--Hb_001832_210 Hb_000000_110 Hb_000000_110 Hb_069659_010--Hb_000000_110 Hb_001004_120 Hb_001004_120 Hb_069659_010--Hb_001004_120 Hb_002687_020--Hb_000442_130 Hb_003929_190 Hb_003929_190 Hb_002687_020--Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_002687_020--Hb_000012_400 Hb_030565_110 Hb_030565_110 Hb_002687_020--Hb_030565_110 Hb_002367_110 Hb_002367_110 Hb_002687_020--Hb_002367_110 Hb_000220_080 Hb_000220_080 Hb_004409_030--Hb_000220_080 Hb_003371_190 Hb_003371_190 Hb_004409_030--Hb_003371_190 Hb_014497_040 Hb_014497_040 Hb_004409_030--Hb_014497_040 Hb_004409_030--Hb_000000_110 Hb_000000_120 Hb_000000_120 Hb_004409_030--Hb_000000_120 Hb_004657_030 Hb_004657_030 Hb_000442_130--Hb_004657_030 Hb_002093_050 Hb_002093_050 Hb_000442_130--Hb_002093_050 Hb_017559_010 Hb_017559_010 Hb_000442_130--Hb_017559_010 Hb_000442_130--Hb_000220_080 Hb_001619_030 Hb_001619_030 Hb_000442_130--Hb_001619_030 Hb_001071_060 Hb_001071_060 Hb_001832_210--Hb_001071_060 Hb_001832_210--Hb_000000_110 Hb_000197_230 Hb_000197_230 Hb_001832_210--Hb_000197_230 Hb_000997_340 Hb_000997_340 Hb_001832_210--Hb_000997_340 Hb_001832_210--Hb_000220_080 Hb_000085_380 Hb_000085_380 Hb_001832_210--Hb_000085_380 Hb_005016_020 Hb_005016_020 Hb_000000_110--Hb_005016_020 Hb_000000_110--Hb_000220_080 Hb_001178_080 Hb_001178_080 Hb_000000_110--Hb_001178_080 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_000500_080 Hb_000500_080 Hb_001004_120--Hb_000500_080 Hb_000649_270 Hb_000649_270 Hb_001004_120--Hb_000649_270 Hb_012353_040 Hb_012353_040 Hb_001004_120--Hb_012353_040 Hb_003082_040 Hb_003082_040 Hb_001004_120--Hb_003082_040 Hb_150346_010 Hb_150346_010 Hb_001004_120--Hb_150346_010 Hb_001004_120--Hb_014497_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244138 0.575795 0.403418 1.51144 0.466898 0.165426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.84603 0.432729

CAGE analysis