Hb_000442_130

Information

Type -
Description -
Location Contig442: 126093-126635
Sequence    

Annotation

kegg
ID rcu:RCOM_0688570
description hypothetical protein
nr
ID XP_002520818.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P20144
description Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1
trembl
ID B9S499
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0688570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42706: 125852-126737
cDNA
(Sanger)
(ID:Location)		 022_D15.ab1: 126038-126737 , 034_J07.ab1: 125900-126737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002687_020 0.14771003 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004657_030 0.1603890942 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
4 Hb_002093_050 0.1767276604 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
5 Hb_017559_010 0.1784723028 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
6 Hb_000220_080 0.1798148214 - - kinase, putative [Ricinus communis]
7 Hb_001619_030 0.1801299924 - - annexin, putative [Ricinus communis]
8 Hb_002072_010 0.1841298991 - - conserved hypothetical protein [Ricinus communis]
9 Hb_069659_010 0.1892859734 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_030565_110 0.189436266 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
11 Hb_000244_260 0.1895846389 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
12 Hb_069619_010 0.195674401 - - Aspartic proteinase precursor, putative [Ricinus communis]
13 Hb_004746_010 0.1961555067 - - aldo/keto reductase, putative [Ricinus communis]
14 Hb_000244_280 0.196795267 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
15 Hb_098315_090 0.1975278298 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
16 Hb_003058_200 0.198900774 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
17 Hb_000723_010 0.2009340785 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_007380_040 0.2034095079 - - receptor-kinase, putative [Ricinus communis]
19 Hb_001195_420 0.2034811007 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
20 Hb_000029_440 0.2048192412 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_000442_130 Hb_000442_130 Hb_002687_020 Hb_002687_020 Hb_000442_130--Hb_002687_020 Hb_004657_030 Hb_004657_030 Hb_000442_130--Hb_004657_030 Hb_002093_050 Hb_002093_050 Hb_000442_130--Hb_002093_050 Hb_017559_010 Hb_017559_010 Hb_000442_130--Hb_017559_010 Hb_000220_080 Hb_000220_080 Hb_000442_130--Hb_000220_080 Hb_001619_030 Hb_001619_030 Hb_000442_130--Hb_001619_030 Hb_069659_010 Hb_069659_010 Hb_002687_020--Hb_069659_010 Hb_003929_190 Hb_003929_190 Hb_002687_020--Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_002687_020--Hb_000012_400 Hb_030565_110 Hb_030565_110 Hb_002687_020--Hb_030565_110 Hb_002367_110 Hb_002367_110 Hb_002687_020--Hb_002367_110 Hb_003058_200 Hb_003058_200 Hb_004657_030--Hb_003058_200 Hb_000723_010 Hb_000723_010 Hb_004657_030--Hb_000723_010 Hb_098315_090 Hb_098315_090 Hb_004657_030--Hb_098315_090 Hb_002072_010 Hb_002072_010 Hb_004657_030--Hb_002072_010 Hb_000244_260 Hb_000244_260 Hb_004657_030--Hb_000244_260 Hb_150346_010 Hb_150346_010 Hb_004657_030--Hb_150346_010 Hb_153257_010 Hb_153257_010 Hb_002093_050--Hb_153257_010 Hb_004746_010 Hb_004746_010 Hb_002093_050--Hb_004746_010 Hb_000406_090 Hb_000406_090 Hb_002093_050--Hb_000406_090 Hb_002093_050--Hb_098315_090 Hb_000823_010 Hb_000823_010 Hb_002093_050--Hb_000823_010 Hb_000803_120 Hb_000803_120 Hb_002093_050--Hb_000803_120 Hb_002603_010 Hb_002603_010 Hb_017559_010--Hb_002603_010 Hb_000574_370 Hb_000574_370 Hb_017559_010--Hb_000574_370 Hb_009193_060 Hb_009193_060 Hb_017559_010--Hb_009193_060 Hb_017559_010--Hb_001619_030 Hb_017559_010--Hb_002093_050 Hb_000473_030 Hb_000473_030 Hb_017559_010--Hb_000473_030 Hb_000000_120 Hb_000000_120 Hb_000220_080--Hb_000000_120 Hb_002316_170 Hb_002316_170 Hb_000220_080--Hb_002316_170 Hb_000072_020 Hb_000072_020 Hb_000220_080--Hb_000072_020 Hb_001009_150 Hb_001009_150 Hb_000220_080--Hb_001009_150 Hb_000000_110 Hb_000000_110 Hb_000220_080--Hb_000000_110 Hb_006949_060 Hb_006949_060 Hb_000220_080--Hb_006949_060 Hb_002527_060 Hb_002527_060 Hb_001619_030--Hb_002527_060 Hb_005181_060 Hb_005181_060 Hb_001619_030--Hb_005181_060 Hb_004330_080 Hb_004330_080 Hb_001619_030--Hb_004330_080 Hb_078081_010 Hb_078081_010 Hb_001619_030--Hb_078081_010 Hb_000590_070 Hb_000590_070 Hb_001619_030--Hb_000590_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.69952 4.79967 4.57604 11.6372 3.43379 2.15176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.461964 0.795024 13.5794 5.27091

CAGE analysis