Hb_002093_050

Information

Type -
Description -
Location Contig2093: 92981-106728
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02940g
description hypothetical protein
nr
ID XP_006379502.1
description hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G4Q7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02940g PE=4 SV=1
Gene Ontology
ID GO:0005768
description hypothetical protein POPTR_0008s02940g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21652: 93233-100170 , PASA_asmbl_21654: 96769-97101 , PASA_asmbl_21655: 103265-104995 , PASA_asmbl_21656: 105709-106036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002093_050 0.0 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
2 Hb_153257_010 0.1196640547 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
3 Hb_004746_010 0.1339887297 - - aldo/keto reductase, putative [Ricinus communis]
4 Hb_000406_090 0.1419632956 - - unknown [Populus trichocarpa]
5 Hb_098315_090 0.1436791236 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
6 Hb_000823_010 0.1444641617 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
7 Hb_000803_120 0.1450012502 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
8 Hb_001488_280 0.1463197357 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
9 Hb_000574_370 0.151846673 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
10 Hb_001434_020 0.1539600936 - - hypothetical protein RCOM_0841800 [Ricinus communis]
11 Hb_005485_070 0.1564338361 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
12 Hb_001677_100 0.1581849205 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
13 Hb_000590_070 0.1592754057 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
14 Hb_002235_190 0.1603882059 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000139_510 0.1619309588 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
16 Hb_024758_020 0.1647230546 - - acyl-CoA binding protein 3B [Vernicia fordii]
17 Hb_002301_250 0.1667675507 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
18 Hb_004297_090 0.1698766402 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
19 Hb_000220_080 0.1705330126 - - kinase, putative [Ricinus communis]
20 Hb_017559_010 0.1723532121 - - hypothetical protein JCGZ_06093 [Jatropha curcas]

Gene co-expression network

sample Hb_002093_050 Hb_002093_050 Hb_153257_010 Hb_153257_010 Hb_002093_050--Hb_153257_010 Hb_004746_010 Hb_004746_010 Hb_002093_050--Hb_004746_010 Hb_000406_090 Hb_000406_090 Hb_002093_050--Hb_000406_090 Hb_098315_090 Hb_098315_090 Hb_002093_050--Hb_098315_090 Hb_000823_010 Hb_000823_010 Hb_002093_050--Hb_000823_010 Hb_000803_120 Hb_000803_120 Hb_002093_050--Hb_000803_120 Hb_000139_510 Hb_000139_510 Hb_153257_010--Hb_000139_510 Hb_153257_010--Hb_000823_010 Hb_005485_070 Hb_005485_070 Hb_153257_010--Hb_005485_070 Hb_004096_220 Hb_004096_220 Hb_153257_010--Hb_004096_220 Hb_000261_310 Hb_000261_310 Hb_153257_010--Hb_000261_310 Hb_000984_140 Hb_000984_140 Hb_004746_010--Hb_000984_140 Hb_001434_020 Hb_001434_020 Hb_004746_010--Hb_001434_020 Hb_004204_210 Hb_004204_210 Hb_004746_010--Hb_004204_210 Hb_001677_100 Hb_001677_100 Hb_004746_010--Hb_001677_100 Hb_024758_020 Hb_024758_020 Hb_004746_010--Hb_024758_020 Hb_005772_030 Hb_005772_030 Hb_004746_010--Hb_005772_030 Hb_008749_020 Hb_008749_020 Hb_000406_090--Hb_008749_020 Hb_000406_090--Hb_001677_100 Hb_004297_090 Hb_004297_090 Hb_000406_090--Hb_004297_090 Hb_001018_060 Hb_001018_060 Hb_000406_090--Hb_001018_060 Hb_000679_110 Hb_000679_110 Hb_000406_090--Hb_000679_110 Hb_098315_090--Hb_000823_010 Hb_000106_020 Hb_000106_020 Hb_098315_090--Hb_000106_020 Hb_000122_080 Hb_000122_080 Hb_098315_090--Hb_000122_080 Hb_002025_270 Hb_002025_270 Hb_098315_090--Hb_002025_270 Hb_004657_030 Hb_004657_030 Hb_098315_090--Hb_004657_030 Hb_000455_130 Hb_000455_130 Hb_098315_090--Hb_000455_130 Hb_000019_170 Hb_000019_170 Hb_000823_010--Hb_000019_170 Hb_000157_070 Hb_000157_070 Hb_000823_010--Hb_000157_070 Hb_001322_180 Hb_001322_180 Hb_000823_010--Hb_001322_180 Hb_003058_200 Hb_003058_200 Hb_000823_010--Hb_003058_200 Hb_000834_230 Hb_000834_230 Hb_000823_010--Hb_000834_230 Hb_007575_030 Hb_007575_030 Hb_000803_120--Hb_007575_030 Hb_000309_030 Hb_000309_030 Hb_000803_120--Hb_000309_030 Hb_005694_180 Hb_005694_180 Hb_000803_120--Hb_005694_180 Hb_000661_220 Hb_000661_220 Hb_000803_120--Hb_000661_220 Hb_000803_120--Hb_004297_090 Hb_000567_090 Hb_000567_090 Hb_000803_120--Hb_000567_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1454 2.23501 4.53132 3.90586 1.22364 1.41558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0794985 0.114694 0.319565 6.77903 3.27513

CAGE analysis