Hb_001004_120

Information

Type -
Description -
Location Contig1004: 241652-246055
Sequence    

Annotation

kegg
ID rcu:RCOM_1444750
description serine/threonine protein kinase, putative
nr
ID XP_012067378.1
description PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9LX66
description Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1
trembl
ID A0A067LBK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26888 PE=3 SV=1
Gene Ontology
ID GO:0005886
description receptor-like protein kinase herk 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00296: 241640-245580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_120 0.0 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
2 Hb_000500_080 0.1403954526 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
3 Hb_000649_270 0.1485668957 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
4 Hb_012353_040 0.1535336033 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_003082_040 0.1590156444 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
6 Hb_150346_010 0.1621453323 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_014497_040 0.165104315 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
8 Hb_004875_010 0.1685957309 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
9 Hb_000562_100 0.1757722406 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
10 Hb_001103_070 0.1760622498 - - Patellin-3, putative [Ricinus communis]
11 Hb_002740_040 0.1763421314 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
12 Hb_027136_010 0.1817384976 - - hypothetical protein L484_010426 [Morus notabilis]
13 Hb_001675_320 0.1824882724 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
14 Hb_002370_030 0.1846851944 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
15 Hb_000205_280 0.1851802709 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
16 Hb_167973_010 0.1865294735 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
17 Hb_001103_090 0.186704733 - - PREDICTED: patellin-3 [Populus euphratica]
18 Hb_000062_030 0.1885165622 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
19 Hb_030312_010 0.1886940206 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000260_780 0.1890232134 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]

Gene co-expression network

sample Hb_001004_120 Hb_001004_120 Hb_000500_080 Hb_000500_080 Hb_001004_120--Hb_000500_080 Hb_000649_270 Hb_000649_270 Hb_001004_120--Hb_000649_270 Hb_012353_040 Hb_012353_040 Hb_001004_120--Hb_012353_040 Hb_003082_040 Hb_003082_040 Hb_001004_120--Hb_003082_040 Hb_150346_010 Hb_150346_010 Hb_001004_120--Hb_150346_010 Hb_014497_040 Hb_014497_040 Hb_001004_120--Hb_014497_040 Hb_001080_130 Hb_001080_130 Hb_000500_080--Hb_001080_130 Hb_031931_020 Hb_031931_020 Hb_000500_080--Hb_031931_020 Hb_000500_080--Hb_150346_010 Hb_000500_080--Hb_000649_270 Hb_002902_080 Hb_002902_080 Hb_000500_080--Hb_002902_080 Hb_004875_010 Hb_004875_010 Hb_000649_270--Hb_004875_010 Hb_001103_090 Hb_001103_090 Hb_000649_270--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_000649_270--Hb_001675_320 Hb_000260_780 Hb_000260_780 Hb_000649_270--Hb_000260_780 Hb_000649_270--Hb_150346_010 Hb_023765_010 Hb_023765_010 Hb_000649_270--Hb_023765_010 Hb_000562_100 Hb_000562_100 Hb_012353_040--Hb_000562_100 Hb_005772_030 Hb_005772_030 Hb_012353_040--Hb_005772_030 Hb_000997_070 Hb_000997_070 Hb_012353_040--Hb_000997_070 Hb_003849_120 Hb_003849_120 Hb_012353_040--Hb_003849_120 Hb_004204_210 Hb_004204_210 Hb_012353_040--Hb_004204_210 Hb_000866_070 Hb_000866_070 Hb_012353_040--Hb_000866_070 Hb_002213_040 Hb_002213_040 Hb_003082_040--Hb_002213_040 Hb_002685_030 Hb_002685_030 Hb_003082_040--Hb_002685_030 Hb_030312_010 Hb_030312_010 Hb_003082_040--Hb_030312_010 Hb_003506_020 Hb_003506_020 Hb_003082_040--Hb_003506_020 Hb_000342_140 Hb_000342_140 Hb_003082_040--Hb_000342_140 Hb_150346_010--Hb_000260_780 Hb_027136_010 Hb_027136_010 Hb_150346_010--Hb_027136_010 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_178968_050 Hb_178968_050 Hb_150346_010--Hb_178968_050 Hb_000205_280 Hb_000205_280 Hb_150346_010--Hb_000205_280 Hb_000580_050 Hb_000580_050 Hb_150346_010--Hb_000580_050 Hb_005941_030 Hb_005941_030 Hb_014497_040--Hb_005941_030 Hb_000012_400 Hb_000012_400 Hb_014497_040--Hb_000012_400 Hb_003029_060 Hb_003029_060 Hb_014497_040--Hb_003029_060 Hb_010812_110 Hb_010812_110 Hb_014497_040--Hb_010812_110 Hb_014497_040--Hb_000562_100 Hb_004631_170 Hb_004631_170 Hb_014497_040--Hb_004631_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37713 9.38881 4.72257 14.2243 8.23783 5.59955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.922643 0.266695 0.0846304 5.50363 5.40953

CAGE analysis