Hb_001080_130

Information

Type -
Description -
Location Contig1080: 73556-88292
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa004776mg
description hypothetical protein
nr
ID AAG43363.1
description catalase [Hevea brasiliensis]
swissprot
ID Q01297
description Catalase isozyme 1 OS=Ricinus communis GN=CAT1 PE=2 SV=2
trembl
ID Q9FEK5
description Catalase OS=Hevea brasiliensis GN=cat PE=2 SV=1
Gene Ontology
ID GO:0009514
description catalase isozyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02413: 73555-76387 , PASA_asmbl_02414: 75256-75417 , PASA_asmbl_02415: 76775-88394 , PASA_asmbl_02416: 76775-88394 , PASA_asmbl_02417: 85686-86062
cDNA
(Sanger)
(ID:Location)		 002_O05.ab1: 74356-75251 , 003_L02.ab1: 73543-74827 , 012_P22.ab1: 74356-75169 , 016_F02.ab1: 73553-74809 , 017_C05.ab1: 73592-74690 , 021_G02.ab1: 73543-74837 , 023_K05.ab1: 73543-74761 , 028_F05.ab1: 73536-74760 , 031_I12.ab1: 73536-74851 , 036_M15.ab1: 73536-74845 , 038_A12.ab1: 76177-76300

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_130 0.0 - - catalase [Hevea brasiliensis]
2 Hb_000221_120 0.1284014991 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
3 Hb_150346_010 0.1395066768 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
4 Hb_000140_450 0.1451303128 - - PREDICTED: calreticulin-3-like [Populus euphratica]
5 Hb_000500_080 0.1504401416 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
6 Hb_000030_240 0.1548426677 - - zinc finger protein, putative [Ricinus communis]
7 Hb_006508_030 0.1583218844 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
8 Hb_031931_020 0.1657531543 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
9 Hb_000723_010 0.1688581527 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_004657_030 0.1693566672 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
11 Hb_001227_100 0.1703530526 - - RecName: Full=Enolase 1; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
12 Hb_074197_020 0.1708321708 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
13 Hb_000755_060 0.1725422495 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104424740 [Eucalyptus grandis]
14 Hb_000630_030 0.1740490485 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
15 Hb_004355_040 0.1754955209 - - epoxide hydrolase, putative [Ricinus communis]
16 Hb_000365_030 0.1790650084 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
17 Hb_002192_030 0.179500042 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000849_080 0.1797484343 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
19 Hb_004040_040 0.1803938038 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
20 Hb_029866_100 0.1818117431 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001080_130 Hb_001080_130 Hb_000221_120 Hb_000221_120 Hb_001080_130--Hb_000221_120 Hb_150346_010 Hb_150346_010 Hb_001080_130--Hb_150346_010 Hb_000140_450 Hb_000140_450 Hb_001080_130--Hb_000140_450 Hb_000500_080 Hb_000500_080 Hb_001080_130--Hb_000500_080 Hb_000030_240 Hb_000030_240 Hb_001080_130--Hb_000030_240 Hb_006508_030 Hb_006508_030 Hb_001080_130--Hb_006508_030 Hb_006478_060 Hb_006478_060 Hb_000221_120--Hb_006478_060 Hb_004974_010 Hb_004974_010 Hb_000221_120--Hb_004974_010 Hb_000365_030 Hb_000365_030 Hb_000221_120--Hb_000365_030 Hb_001675_070 Hb_001675_070 Hb_000221_120--Hb_001675_070 Hb_001977_010 Hb_001977_010 Hb_000221_120--Hb_001977_010 Hb_000260_780 Hb_000260_780 Hb_150346_010--Hb_000260_780 Hb_027136_010 Hb_027136_010 Hb_150346_010--Hb_027136_010 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_178968_050 Hb_178968_050 Hb_150346_010--Hb_178968_050 Hb_000205_280 Hb_000205_280 Hb_150346_010--Hb_000205_280 Hb_000580_050 Hb_000580_050 Hb_150346_010--Hb_000580_050 Hb_000849_080 Hb_000849_080 Hb_000140_450--Hb_000849_080 Hb_031931_020 Hb_031931_020 Hb_000140_450--Hb_031931_020 Hb_073973_150 Hb_073973_150 Hb_000140_450--Hb_073973_150 Hb_000320_290 Hb_000320_290 Hb_000140_450--Hb_000320_290 Hb_001194_020 Hb_001194_020 Hb_000140_450--Hb_001194_020 Hb_000140_450--Hb_000284_230 Hb_001004_120 Hb_001004_120 Hb_000500_080--Hb_001004_120 Hb_000500_080--Hb_031931_020 Hb_000500_080--Hb_150346_010 Hb_000649_270 Hb_000649_270 Hb_000500_080--Hb_000649_270 Hb_002902_080 Hb_002902_080 Hb_000500_080--Hb_002902_080 Hb_000733_050 Hb_000733_050 Hb_000030_240--Hb_000733_050 Hb_000030_240--Hb_000221_120 Hb_078477_050 Hb_078477_050 Hb_000030_240--Hb_078477_050 Hb_009485_020 Hb_009485_020 Hb_000030_240--Hb_009485_020 Hb_000258_290 Hb_000258_290 Hb_000030_240--Hb_000258_290 Hb_002814_060 Hb_002814_060 Hb_006508_030--Hb_002814_060 Hb_018202_050 Hb_018202_050 Hb_006508_030--Hb_018202_050 Hb_000384_080 Hb_000384_080 Hb_006508_030--Hb_000384_080 Hb_001369_350 Hb_001369_350 Hb_006508_030--Hb_001369_350 Hb_012528_020 Hb_012528_020 Hb_006508_030--Hb_012528_020 Hb_000261_100 Hb_000261_100 Hb_006508_030--Hb_000261_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
153.319 97.9172 95.9482 322.215 210.89 178.034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.5398 13.9913 16.3757 291.726 113.022

CAGE analysis