Hb_000221_120

Information

Type -
Description -
Location Contig221: 174535-180853
Sequence    

Annotation

kegg
ID rcu:RCOM_1037260
description hypothetical protein
nr
ID XP_012067918.1
description PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9RJP4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1037260 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22771: 175123-175676 , PASA_asmbl_22772: 175396-177707 , PASA_asmbl_22773: 178518-178683 , PASA_asmbl_22774: 176139-178972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_120 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
2 Hb_006478_060 0.1079694688 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
3 Hb_004974_010 0.116737143 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
4 Hb_000365_030 0.1235072662 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
5 Hb_001080_130 0.1284014991 - - catalase [Hevea brasiliensis]
6 Hb_001675_070 0.1288957867 - - eukaryotic translation elongation factor, putative [Ricinus communis]
7 Hb_001977_010 0.1296974153 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
8 Hb_001366_210 0.1329712645 - - cathepsin B, putative [Ricinus communis]
9 Hb_007456_040 0.1332614694 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
10 Hb_004875_030 0.1349771702 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
11 Hb_004195_060 0.1349941937 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
12 Hb_008177_030 0.135205247 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_086287_010 0.135247936 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
14 Hb_000181_250 0.1371802369 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
15 Hb_078477_050 0.1380247506 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
16 Hb_003913_110 0.1385824327 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
17 Hb_002260_080 0.1388453665 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
18 Hb_118840_030 0.1400259718 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
19 Hb_001621_130 0.1419313077 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
20 Hb_000345_360 0.1427853224 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000221_120 Hb_000221_120 Hb_006478_060 Hb_006478_060 Hb_000221_120--Hb_006478_060 Hb_004974_010 Hb_004974_010 Hb_000221_120--Hb_004974_010 Hb_000365_030 Hb_000365_030 Hb_000221_120--Hb_000365_030 Hb_001080_130 Hb_001080_130 Hb_000221_120--Hb_001080_130 Hb_001675_070 Hb_001675_070 Hb_000221_120--Hb_001675_070 Hb_001977_010 Hb_001977_010 Hb_000221_120--Hb_001977_010 Hb_002374_320 Hb_002374_320 Hb_006478_060--Hb_002374_320 Hb_010053_030 Hb_010053_030 Hb_006478_060--Hb_010053_030 Hb_011930_080 Hb_011930_080 Hb_006478_060--Hb_011930_080 Hb_000923_080 Hb_000923_080 Hb_006478_060--Hb_000923_080 Hb_001621_130 Hb_001621_130 Hb_006478_060--Hb_001621_130 Hb_174821_010 Hb_174821_010 Hb_006478_060--Hb_174821_010 Hb_004974_010--Hb_001621_130 Hb_004974_010--Hb_006478_060 Hb_004974_010--Hb_010053_030 Hb_000181_250 Hb_000181_250 Hb_004974_010--Hb_000181_250 Hb_000505_020 Hb_000505_020 Hb_004974_010--Hb_000505_020 Hb_001366_210 Hb_001366_210 Hb_004974_010--Hb_001366_210 Hb_000130_020 Hb_000130_020 Hb_000365_030--Hb_000130_020 Hb_178968_050 Hb_178968_050 Hb_000365_030--Hb_178968_050 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_004109_370 Hb_004109_370 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000635_030 Hb_000635_030 Hb_000365_030--Hb_000635_030 Hb_150346_010 Hb_150346_010 Hb_001080_130--Hb_150346_010 Hb_000140_450 Hb_000140_450 Hb_001080_130--Hb_000140_450 Hb_000500_080 Hb_000500_080 Hb_001080_130--Hb_000500_080 Hb_000030_240 Hb_000030_240 Hb_001080_130--Hb_000030_240 Hb_006508_030 Hb_006508_030 Hb_001080_130--Hb_006508_030 Hb_000209_070 Hb_000209_070 Hb_001675_070--Hb_000209_070 Hb_001541_080 Hb_001541_080 Hb_001675_070--Hb_001541_080 Hb_001143_110 Hb_001143_110 Hb_001675_070--Hb_001143_110 Hb_003464_020 Hb_003464_020 Hb_001675_070--Hb_003464_020 Hb_011716_020 Hb_011716_020 Hb_001675_070--Hb_011716_020 Hb_000347_130 Hb_000347_130 Hb_001675_070--Hb_000347_130 Hb_118840_030 Hb_118840_030 Hb_001977_010--Hb_118840_030 Hb_002391_370 Hb_002391_370 Hb_001977_010--Hb_002391_370 Hb_001452_220 Hb_001452_220 Hb_001977_010--Hb_001452_220 Hb_002909_090 Hb_002909_090 Hb_001977_010--Hb_002909_090 Hb_002260_080 Hb_002260_080 Hb_001977_010--Hb_002260_080 Hb_000158_100 Hb_000158_100 Hb_001977_010--Hb_000158_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0382 16.8503 11.8368 28.4004 35.7902 33.976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.90946 5.17923 6.24529 42.3214 14.5422

CAGE analysis