Hb_006478_060

Information

Type -
Description -
Location Contig6478: 52025-57796
Sequence    

Annotation

kegg
ID rcu:RCOM_0646290
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative (EC:2.1.1.10)
nr
ID XP_012092192.1
description PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9M1W4
description Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1
trembl
ID A0A067JPF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21890 PE=4 SV=1
Gene Ontology
ID GO:0008898
description homocysteine s-methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52402: 52237-57786
cDNA
(Sanger)
(ID:Location)		 053_G15.ab1: 52595-52859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_060 0.0 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
2 Hb_002374_320 0.0657957025 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
3 Hb_010053_030 0.0684686718 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
4 Hb_011930_080 0.0800053267 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
5 Hb_000923_080 0.0812111751 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
6 Hb_001621_130 0.0816190423 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
7 Hb_174821_010 0.0827928387 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
8 Hb_002078_100 0.0834042981 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
9 Hb_000307_210 0.0845275618 - - Transportin 1 isoform 1 [Theobroma cacao]
10 Hb_000648_100 0.0847410521 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
11 Hb_004974_010 0.0861429431 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
12 Hb_067193_010 0.0873270775 - - -
13 Hb_005731_090 0.0883025202 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
14 Hb_001221_150 0.0886494057 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
15 Hb_000505_020 0.0925909412 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
16 Hb_001235_140 0.092694473 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
17 Hb_001675_070 0.0943472993 - - eukaryotic translation elongation factor, putative [Ricinus communis]
18 Hb_002631_170 0.0943883426 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
19 Hb_001366_210 0.0944868022 - - cathepsin B, putative [Ricinus communis]
20 Hb_000470_070 0.0949103951 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]

Gene co-expression network

sample Hb_006478_060 Hb_006478_060 Hb_002374_320 Hb_002374_320 Hb_006478_060--Hb_002374_320 Hb_010053_030 Hb_010053_030 Hb_006478_060--Hb_010053_030 Hb_011930_080 Hb_011930_080 Hb_006478_060--Hb_011930_080 Hb_000923_080 Hb_000923_080 Hb_006478_060--Hb_000923_080 Hb_001621_130 Hb_001621_130 Hb_006478_060--Hb_001621_130 Hb_174821_010 Hb_174821_010 Hb_006478_060--Hb_174821_010 Hb_002374_320--Hb_011930_080 Hb_001832_130 Hb_001832_130 Hb_002374_320--Hb_001832_130 Hb_001307_080 Hb_001307_080 Hb_002374_320--Hb_001307_080 Hb_000406_230 Hb_000406_230 Hb_002374_320--Hb_000406_230 Hb_003040_020 Hb_003040_020 Hb_002374_320--Hb_003040_020 Hb_010053_030--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_010053_030--Hb_000505_020 Hb_104061_020 Hb_104061_020 Hb_010053_030--Hb_104061_020 Hb_001235_140 Hb_001235_140 Hb_010053_030--Hb_001235_140 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_001427_190 Hb_001427_190 Hb_011930_080--Hb_001427_190 Hb_019654_040 Hb_019654_040 Hb_011930_080--Hb_019654_040 Hb_011930_080--Hb_000648_100 Hb_002078_100 Hb_002078_100 Hb_011930_080--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_011930_080--Hb_002888_070 Hb_004235_080 Hb_004235_080 Hb_000923_080--Hb_004235_080 Hb_000923_080--Hb_000648_100 Hb_004209_020 Hb_004209_020 Hb_000923_080--Hb_004209_020 Hb_008159_020 Hb_008159_020 Hb_000923_080--Hb_008159_020 Hb_000923_080--Hb_104061_020 Hb_001621_130--Hb_010053_030 Hb_000369_130 Hb_000369_130 Hb_001621_130--Hb_000369_130 Hb_000343_030 Hb_000343_030 Hb_001621_130--Hb_000343_030 Hb_001621_130--Hb_000923_080 Hb_001621_130--Hb_000505_020 Hb_000470_070 Hb_000470_070 Hb_174821_010--Hb_000470_070 Hb_174821_010--Hb_002078_100 Hb_174821_010--Hb_000648_100 Hb_000613_080 Hb_000613_080 Hb_174821_010--Hb_000613_080 Hb_001617_060 Hb_001617_060 Hb_174821_010--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_174821_010--Hb_003966_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2545 14.0943 10.615 12.6397 23.0778 21.8479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.92554 5.52119 5.91738 20.2274 7.5017

CAGE analysis