Hb_000580_050

Information

Type -
Description -
Location Contig580: 24618-27411
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49826: 25024-25175 , PASA_asmbl_49827: 26254-26968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_050 0.0 - - -
2 Hb_000856_300 0.0755194034 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
3 Hb_000260_780 0.0834355788 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
4 Hb_001558_040 0.0855772823 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
5 Hb_000243_300 0.0904128214 - - catalytic, putative [Ricinus communis]
6 Hb_000172_340 0.0919493915 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
7 Hb_001085_110 0.094031946 - - T6D22.2 [Arabidopsis thaliana]
8 Hb_008948_140 0.0948390888 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
9 Hb_002005_030 0.0957268764 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
10 Hb_004223_160 0.0970244523 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
11 Hb_004109_380 0.0983424081 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
12 Hb_000020_160 0.0984338744 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
13 Hb_000358_100 0.0991988086 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
14 Hb_009252_050 0.0993173088 - - protein binding protein, putative [Ricinus communis]
15 Hb_135959_010 0.1004656894 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
16 Hb_002045_250 0.1008038099 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
17 Hb_002092_070 0.100989683 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
18 Hb_007245_020 0.1012776728 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
19 Hb_006907_140 0.1014315524 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007747_170 0.1024220022 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]

Gene co-expression network

sample Hb_000580_050 Hb_000580_050 Hb_000856_300 Hb_000856_300 Hb_000580_050--Hb_000856_300 Hb_000260_780 Hb_000260_780 Hb_000580_050--Hb_000260_780 Hb_001558_040 Hb_001558_040 Hb_000580_050--Hb_001558_040 Hb_000243_300 Hb_000243_300 Hb_000580_050--Hb_000243_300 Hb_000172_340 Hb_000172_340 Hb_000580_050--Hb_000172_340 Hb_001085_110 Hb_001085_110 Hb_000580_050--Hb_001085_110 Hb_008948_140 Hb_008948_140 Hb_000856_300--Hb_008948_140 Hb_000926_150 Hb_000926_150 Hb_000856_300--Hb_000926_150 Hb_001008_100 Hb_001008_100 Hb_000856_300--Hb_001008_100 Hb_000373_170 Hb_000373_170 Hb_000856_300--Hb_000373_170 Hb_000787_200 Hb_000787_200 Hb_000856_300--Hb_000787_200 Hb_009252_050 Hb_009252_050 Hb_000260_780--Hb_009252_050 Hb_002092_070 Hb_002092_070 Hb_000260_780--Hb_002092_070 Hb_000205_280 Hb_000205_280 Hb_000260_780--Hb_000205_280 Hb_000358_100 Hb_000358_100 Hb_000260_780--Hb_000358_100 Hb_000020_160 Hb_000020_160 Hb_000260_780--Hb_000020_160 Hb_001307_240 Hb_001307_240 Hb_001558_040--Hb_001307_240 Hb_002007_260 Hb_002007_260 Hb_001558_040--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_001558_040--Hb_000579_130 Hb_001085_080 Hb_001085_080 Hb_001558_040--Hb_001085_080 Hb_001558_040--Hb_000020_160 Hb_158845_060 Hb_158845_060 Hb_001558_040--Hb_158845_060 Hb_141069_010 Hb_141069_010 Hb_000243_300--Hb_141069_010 Hb_000243_300--Hb_001085_110 Hb_004109_370 Hb_004109_370 Hb_000243_300--Hb_004109_370 Hb_000243_300--Hb_009252_050 Hb_188063_050 Hb_188063_050 Hb_000243_300--Hb_188063_050 Hb_039946_050 Hb_039946_050 Hb_000243_300--Hb_039946_050 Hb_001904_030 Hb_001904_030 Hb_000172_340--Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_123531_010 Hb_123531_010 Hb_000172_340--Hb_123531_010 Hb_007245_020 Hb_007245_020 Hb_000172_340--Hb_007245_020 Hb_000066_150 Hb_000066_150 Hb_000172_340--Hb_000066_150 Hb_001085_110--Hb_009252_050 Hb_001085_110--Hb_004109_370 Hb_003124_160 Hb_003124_160 Hb_001085_110--Hb_003124_160 Hb_007657_020 Hb_007657_020 Hb_001085_110--Hb_007657_020 Hb_008397_010 Hb_008397_010 Hb_001085_110--Hb_008397_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.28733 9.91708 5.70515 9.07874 5.73604 4.81448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28749 2.5093 1.09413 10.2223 6.46176

CAGE analysis