Hb_000649_270

Information

Type -
Description -
Location Contig649: 275217-277627
Sequence    

Annotation

kegg
ID rcu:RCOM_0597560
description DUF26 domain-containing protein 1 precursor, putative
nr
ID XP_002525981.1
description DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
swissprot
ID Q9ZU94
description Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana GN=CRRSP12 PE=1 SV=2
trembl
ID B9SJ12
description DUF26 domain-containing protein 1, putative OS=Ricinus communis GN=RCOM_0597560 PE=4 SV=1
Gene Ontology
ID GO:0009506
description cysteine-rich repeat secretory protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52499: 274918-277489
cDNA
(Sanger)
(ID:Location)		 009_H09.ab1: 275494-277489 , 042_O04.ab1: 275073-277048

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_270 0.0 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
2 Hb_004875_010 0.114177687 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
3 Hb_001103_090 0.1220315337 - - PREDICTED: patellin-3 [Populus euphratica]
4 Hb_001675_320 0.1296672533 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
5 Hb_000260_780 0.1305606071 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
6 Hb_150346_010 0.1322776707 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_023765_010 0.1353588485 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_000205_280 0.1392630848 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
9 Hb_001004_120 0.1485668957 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
10 Hb_000358_100 0.1513190171 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
11 Hb_000334_130 0.1518998502 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
12 Hb_027136_010 0.1532593121 - - hypothetical protein L484_010426 [Morus notabilis]
13 Hb_012239_030 0.1532657696 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_000997_070 0.1535165396 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
15 Hb_000359_190 0.1545989841 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
16 Hb_028077_020 0.1568429465 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000020_160 0.1582140746 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
18 Hb_000284_230 0.1583408835 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
19 Hb_002005_030 0.1590166171 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
20 Hb_002902_080 0.1598437079 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]

Gene co-expression network

sample Hb_000649_270 Hb_000649_270 Hb_004875_010 Hb_004875_010 Hb_000649_270--Hb_004875_010 Hb_001103_090 Hb_001103_090 Hb_000649_270--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_000649_270--Hb_001675_320 Hb_000260_780 Hb_000260_780 Hb_000649_270--Hb_000260_780 Hb_150346_010 Hb_150346_010 Hb_000649_270--Hb_150346_010 Hb_023765_010 Hb_023765_010 Hb_000649_270--Hb_023765_010 Hb_014720_030 Hb_014720_030 Hb_004875_010--Hb_014720_030 Hb_000922_220 Hb_000922_220 Hb_004875_010--Hb_000922_220 Hb_122273_020 Hb_122273_020 Hb_004875_010--Hb_122273_020 Hb_002005_030 Hb_002005_030 Hb_004875_010--Hb_002005_030 Hb_005772_030 Hb_005772_030 Hb_004875_010--Hb_005772_030 Hb_001103_090--Hb_001675_320 Hb_001226_110 Hb_001226_110 Hb_001103_090--Hb_001226_110 Hb_000205_280 Hb_000205_280 Hb_001103_090--Hb_000205_280 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_001103_090--Hb_000260_780 Hb_001878_060 Hb_001878_060 Hb_001675_320--Hb_001878_060 Hb_001675_320--Hb_000205_280 Hb_003849_220 Hb_003849_220 Hb_001675_320--Hb_003849_220 Hb_028077_020 Hb_028077_020 Hb_001675_320--Hb_028077_020 Hb_003599_030 Hb_003599_030 Hb_001675_320--Hb_003599_030 Hb_009252_050 Hb_009252_050 Hb_000260_780--Hb_009252_050 Hb_002092_070 Hb_002092_070 Hb_000260_780--Hb_002092_070 Hb_000260_780--Hb_000205_280 Hb_000358_100 Hb_000358_100 Hb_000260_780--Hb_000358_100 Hb_000580_050 Hb_000580_050 Hb_000260_780--Hb_000580_050 Hb_000260_780--Hb_000020_160 Hb_150346_010--Hb_000260_780 Hb_027136_010 Hb_027136_010 Hb_150346_010--Hb_027136_010 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_178968_050 Hb_178968_050 Hb_150346_010--Hb_178968_050 Hb_150346_010--Hb_000205_280 Hb_150346_010--Hb_000580_050 Hb_000674_010 Hb_000674_010 Hb_023765_010--Hb_000674_010 Hb_005000_090 Hb_005000_090 Hb_023765_010--Hb_005000_090 Hb_002072_010 Hb_002072_010 Hb_023765_010--Hb_002072_010 Hb_002400_060 Hb_002400_060 Hb_023765_010--Hb_002400_060 Hb_023765_010--Hb_028077_020 Hb_002367_110 Hb_002367_110 Hb_023765_010--Hb_002367_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2379 37.0139 14.94 47.1698 34.3963 10.9699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.24385 2.44189 6.62005 23.2642 27.0008

CAGE analysis