Hb_000853_400

Information

Type -
Description -
Location Contig853: 279249-287330
Sequence    

Annotation

kegg
ID rcu:RCOM_1347860
description ctp synthase, putative (EC:6.3.4.2)
nr
ID XP_012082857.1
description PREDICTED: CTP synthase [Jatropha curcas]
swissprot
ID Q54V77
description CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1
trembl
ID A0A067K8X1
description CTP synthase OS=Jatropha curcas GN=JCGZ_14000 PE=3 SV=1
Gene Ontology
ID GO:0003883
description ctp synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60509: 278726-279588 , PASA_asmbl_60510: 282511-283270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_400 0.0 - - PREDICTED: CTP synthase [Jatropha curcas]
2 Hb_010427_010 0.1471069205 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
3 Hb_000270_520 0.155651144 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
4 Hb_012738_030 0.1655118353 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003449_070 0.1680610197 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
6 Hb_005976_050 0.1754115105 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
7 Hb_000212_310 0.1756624688 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
8 Hb_000703_150 0.1779672977 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
9 Hb_004224_020 0.1780492322 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
10 Hb_009367_080 0.1811597313 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
11 Hb_003939_040 0.1822728479 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
12 Hb_002666_020 0.1826171971 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
13 Hb_000537_140 0.1855439307 - - lupus la ribonucleoprotein, putative [Ricinus communis]
14 Hb_001221_140 0.1861177036 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000432_060 0.1879947088 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_004411_030 0.1887801103 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
17 Hb_011287_080 0.1895114788 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010368_060 0.1898443047 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007803_050 0.1908079001 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
20 Hb_000556_220 0.1914020625 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000853_400 Hb_000853_400 Hb_010427_010 Hb_010427_010 Hb_000853_400--Hb_010427_010 Hb_000270_520 Hb_000270_520 Hb_000853_400--Hb_000270_520 Hb_012738_030 Hb_012738_030 Hb_000853_400--Hb_012738_030 Hb_003449_070 Hb_003449_070 Hb_000853_400--Hb_003449_070 Hb_005976_050 Hb_005976_050 Hb_000853_400--Hb_005976_050 Hb_000212_310 Hb_000212_310 Hb_000853_400--Hb_000212_310 Hb_006660_010 Hb_006660_010 Hb_010427_010--Hb_006660_010 Hb_010427_010--Hb_003449_070 Hb_011310_160 Hb_011310_160 Hb_010427_010--Hb_011310_160 Hb_010427_010--Hb_000212_310 Hb_003294_090 Hb_003294_090 Hb_010427_010--Hb_003294_090 Hb_005679_050 Hb_005679_050 Hb_010427_010--Hb_005679_050 Hb_142218_020 Hb_142218_020 Hb_000270_520--Hb_142218_020 Hb_003050_390 Hb_003050_390 Hb_000270_520--Hb_003050_390 Hb_000270_510 Hb_000270_510 Hb_000270_520--Hb_000270_510 Hb_005137_040 Hb_005137_040 Hb_000270_520--Hb_005137_040 Hb_000703_150 Hb_000703_150 Hb_000270_520--Hb_000703_150 Hb_000035_200 Hb_000035_200 Hb_000270_520--Hb_000035_200 Hb_005892_020 Hb_005892_020 Hb_012738_030--Hb_005892_020 Hb_000322_180 Hb_000322_180 Hb_012738_030--Hb_000322_180 Hb_000088_050 Hb_000088_050 Hb_012738_030--Hb_000088_050 Hb_183867_010 Hb_183867_010 Hb_012738_030--Hb_183867_010 Hb_004116_170 Hb_004116_170 Hb_012738_030--Hb_004116_170 Hb_001497_060 Hb_001497_060 Hb_012738_030--Hb_001497_060 Hb_000613_080 Hb_000613_080 Hb_003449_070--Hb_000613_080 Hb_000832_220 Hb_000832_220 Hb_003449_070--Hb_000832_220 Hb_001617_060 Hb_001617_060 Hb_003449_070--Hb_001617_060 Hb_000088_130 Hb_000088_130 Hb_003449_070--Hb_000088_130 Hb_000922_370 Hb_000922_370 Hb_003449_070--Hb_000922_370 Hb_174821_010 Hb_174821_010 Hb_003449_070--Hb_174821_010 Hb_005976_050--Hb_010427_010 Hb_005976_050--Hb_000212_310 Hb_000031_150 Hb_000031_150 Hb_005976_050--Hb_000031_150 Hb_007904_160 Hb_007904_160 Hb_005976_050--Hb_007904_160 Hb_000933_060 Hb_000933_060 Hb_005976_050--Hb_000933_060 Hb_000330_100 Hb_000330_100 Hb_005976_050--Hb_000330_100 Hb_000212_310--Hb_006660_010 Hb_002169_050 Hb_002169_050 Hb_000212_310--Hb_002169_050 Hb_000212_310--Hb_007904_160 Hb_002909_140 Hb_002909_140 Hb_000212_310--Hb_002909_140 Hb_000212_380 Hb_000212_380 Hb_000212_310--Hb_000212_380 Hb_004676_010 Hb_004676_010 Hb_000212_310--Hb_004676_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15746 2.78535 2.33835 2.94993 1.26914 5.5162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.659388 0.485363 4.41775 4.66536 1.09817

CAGE analysis