Hb_000270_510

Information

Type -
Description -
Location Contig270: 386439-389694
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G182100g
description hypothetical protein
nr
ID KDO69793.1
description hypothetical protein CISIN_1g008173mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FR32
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008173mg PE=4 SV=1
Gene Ontology
ID GO:0004561
description alpha-n-acetylglucosaminidase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28235: 386440-404899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_510 0.0 - - hypothetical protein CISIN_1g008173mg [Citrus sinensis]
2 Hb_003050_390 0.0976367526 - - PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
3 Hb_003528_010 0.0992917246 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
4 Hb_004324_400 0.1003354015 - - PREDICTED: protein timeless homolog [Jatropha curcas]
5 Hb_000270_520 0.1055631934 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
6 Hb_001135_130 0.1149391334 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
7 Hb_000035_200 0.1235339329 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
8 Hb_000442_150 0.1269450592 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
9 Hb_000603_150 0.1275123308 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
10 Hb_000205_300 0.1277215924 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
11 Hb_187679_010 0.1282459333 - - -
12 Hb_000094_280 0.1293955021 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
13 Hb_000025_630 0.1313184803 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
14 Hb_004204_170 0.1328457356 - - synaptosomal associated protein, putative [Ricinus communis]
15 Hb_005137_040 0.1333514017 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
16 Hb_003549_150 0.1334724128 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
17 Hb_000300_500 0.1336406714 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
18 Hb_006588_200 0.1356233924 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
19 Hb_142218_020 0.135630439 - - actin family protein [Populus trichocarpa]
20 Hb_000025_030 0.1366369295 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000270_510 Hb_000270_510 Hb_003050_390 Hb_003050_390 Hb_000270_510--Hb_003050_390 Hb_003528_010 Hb_003528_010 Hb_000270_510--Hb_003528_010 Hb_004324_400 Hb_004324_400 Hb_000270_510--Hb_004324_400 Hb_000270_520 Hb_000270_520 Hb_000270_510--Hb_000270_520 Hb_001135_130 Hb_001135_130 Hb_000270_510--Hb_001135_130 Hb_000035_200 Hb_000035_200 Hb_000270_510--Hb_000035_200 Hb_000080_150 Hb_000080_150 Hb_003050_390--Hb_000080_150 Hb_003050_390--Hb_000270_520 Hb_003050_390--Hb_001135_130 Hb_003050_390--Hb_003528_010 Hb_004204_170 Hb_004204_170 Hb_003050_390--Hb_004204_170 Hb_032920_060 Hb_032920_060 Hb_003528_010--Hb_032920_060 Hb_000185_070 Hb_000185_070 Hb_003528_010--Hb_000185_070 Hb_003549_150 Hb_003549_150 Hb_003528_010--Hb_003549_150 Hb_010381_090 Hb_010381_090 Hb_003528_010--Hb_010381_090 Hb_006588_200 Hb_006588_200 Hb_003528_010--Hb_006588_200 Hb_000205_300 Hb_000205_300 Hb_003528_010--Hb_000205_300 Hb_002046_110 Hb_002046_110 Hb_004324_400--Hb_002046_110 Hb_145880_010 Hb_145880_010 Hb_004324_400--Hb_145880_010 Hb_004324_400--Hb_006588_200 Hb_004324_400--Hb_003528_010 Hb_030982_030 Hb_030982_030 Hb_004324_400--Hb_030982_030 Hb_142218_020 Hb_142218_020 Hb_000270_520--Hb_142218_020 Hb_005137_040 Hb_005137_040 Hb_000270_520--Hb_005137_040 Hb_000703_150 Hb_000703_150 Hb_000270_520--Hb_000703_150 Hb_000270_520--Hb_000035_200 Hb_004310_020 Hb_004310_020 Hb_001135_130--Hb_004310_020 Hb_000982_060 Hb_000982_060 Hb_001135_130--Hb_000982_060 Hb_000442_150 Hb_000442_150 Hb_001135_130--Hb_000442_150 Hb_001135_130--Hb_000205_300 Hb_002235_210 Hb_002235_210 Hb_001135_130--Hb_002235_210 Hb_057878_010 Hb_057878_010 Hb_001135_130--Hb_057878_010 Hb_000146_040 Hb_000146_040 Hb_000035_200--Hb_000146_040 Hb_000696_010 Hb_000696_010 Hb_000035_200--Hb_000696_010 Hb_131035_010 Hb_131035_010 Hb_000035_200--Hb_131035_010 Hb_001500_110 Hb_001500_110 Hb_000035_200--Hb_001500_110 Hb_004970_140 Hb_004970_140 Hb_000035_200--Hb_004970_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.86082 5.91814 7.78365 10.4044 5.67201 7.11666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.03322 3.85843 10.1513 5.8916 1.24687

CAGE analysis