Hb_004970_140

Information

Type -
Description -
Location Contig4970: 109415-114980
Sequence    

Annotation

kegg
ID rcu:RCOM_1590210
description DNA binding protein, putative
nr
ID XP_012071648.1
description PREDICTED: uncharacterized protein LOC105633635 [Jatropha curcas]
swissprot
ID Q9M2D8
description Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1
trembl
ID A0A067KQD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04252 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45553: 109487-114663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_140 0.0 - - PREDICTED: uncharacterized protein LOC105633635 [Jatropha curcas]
2 Hb_000035_200 0.1139689619 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
3 Hb_000212_380 0.114611406 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
4 Hb_002375_040 0.1180443478 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
5 Hb_002660_150 0.1196340151 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
6 Hb_011282_060 0.122615873 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
7 Hb_000184_240 0.1237064446 - - PREDICTED: uncharacterized protein LOC105647985 isoform X2 [Jatropha curcas]
8 Hb_000300_600 0.1239511642 - - tubulin alpha chain, putative [Ricinus communis]
9 Hb_002150_040 0.1246870887 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
10 Hb_007460_020 0.1297568756 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
11 Hb_000352_300 0.1299921474 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
12 Hb_002909_140 0.1304644301 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
13 Hb_129204_040 0.1306439873 - - PREDICTED: meiotic nuclear division protein 1 homolog isoform X1 [Jatropha curcas]
14 Hb_000159_090 0.1312024188 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
15 Hb_000371_090 0.1322957973 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
16 Hb_001789_030 0.1346331124 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
17 Hb_001269_330 0.1349254607 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
18 Hb_003925_020 0.1358599891 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
19 Hb_000163_090 0.137205813 - - gamma-tubulin complex component, putative [Ricinus communis]
20 Hb_009193_090 0.1373948026 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004970_140 Hb_004970_140 Hb_000035_200 Hb_000035_200 Hb_004970_140--Hb_000035_200 Hb_000212_380 Hb_000212_380 Hb_004970_140--Hb_000212_380 Hb_002375_040 Hb_002375_040 Hb_004970_140--Hb_002375_040 Hb_002660_150 Hb_002660_150 Hb_004970_140--Hb_002660_150 Hb_011282_060 Hb_011282_060 Hb_004970_140--Hb_011282_060 Hb_000184_240 Hb_000184_240 Hb_004970_140--Hb_000184_240 Hb_000146_040 Hb_000146_040 Hb_000035_200--Hb_000146_040 Hb_000696_010 Hb_000696_010 Hb_000035_200--Hb_000696_010 Hb_131035_010 Hb_131035_010 Hb_000035_200--Hb_131035_010 Hb_001500_110 Hb_001500_110 Hb_000035_200--Hb_001500_110 Hb_000270_520 Hb_000270_520 Hb_000035_200--Hb_000270_520 Hb_002909_140 Hb_002909_140 Hb_000212_380--Hb_002909_140 Hb_001936_130 Hb_001936_130 Hb_000212_380--Hb_001936_130 Hb_012322_010 Hb_012322_010 Hb_000212_380--Hb_012322_010 Hb_002169_050 Hb_002169_050 Hb_000212_380--Hb_002169_050 Hb_001004_070 Hb_001004_070 Hb_000212_380--Hb_001004_070 Hb_012498_010 Hb_012498_010 Hb_000212_380--Hb_012498_010 Hb_003671_010 Hb_003671_010 Hb_002375_040--Hb_003671_010 Hb_002375_040--Hb_000696_010 Hb_001191_110 Hb_001191_110 Hb_002375_040--Hb_001191_110 Hb_001205_250 Hb_001205_250 Hb_002375_040--Hb_001205_250 Hb_003964_070 Hb_003964_070 Hb_002375_040--Hb_003964_070 Hb_000594_050 Hb_000594_050 Hb_002375_040--Hb_000594_050 Hb_000331_370 Hb_000331_370 Hb_002660_150--Hb_000331_370 Hb_052805_010 Hb_052805_010 Hb_002660_150--Hb_052805_010 Hb_169631_010 Hb_169631_010 Hb_002660_150--Hb_169631_010 Hb_000172_510 Hb_000172_510 Hb_002660_150--Hb_000172_510 Hb_004032_030 Hb_004032_030 Hb_002660_150--Hb_004032_030 Hb_010407_140 Hb_010407_140 Hb_002660_150--Hb_010407_140 Hb_011282_060--Hb_052805_010 Hb_006570_160 Hb_006570_160 Hb_011282_060--Hb_006570_160 Hb_003528_030 Hb_003528_030 Hb_011282_060--Hb_003528_030 Hb_001227_130 Hb_001227_130 Hb_011282_060--Hb_001227_130 Hb_001269_330 Hb_001269_330 Hb_011282_060--Hb_001269_330 Hb_011282_060--Hb_010407_140 Hb_004586_150 Hb_004586_150 Hb_000184_240--Hb_004586_150 Hb_000082_010 Hb_000082_010 Hb_000184_240--Hb_000082_010 Hb_000483_310 Hb_000483_310 Hb_000184_240--Hb_000483_310 Hb_002676_120 Hb_002676_120 Hb_000184_240--Hb_002676_120 Hb_009193_090 Hb_009193_090 Hb_000184_240--Hb_009193_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.78 2.9734 11.106 19.4456 7.51801 14.0791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.03467 4.8892 12.2376 15.3547 6.06099

CAGE analysis