Hb_000184_240

Information

Type -
Description -
Location Contig184: 287667-301057
Sequence    

Annotation

kegg
ID vvi:100244248
description uncharacterized LOC100244248
nr
ID XP_012089607.1
description PREDICTED: uncharacterized protein LOC105647985 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SF28
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1213190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18016: 287783-289005 , PASA_asmbl_18017: 288026-289745 , PASA_asmbl_18018: 288026-289745 , PASA_asmbl_18019: 289946-294171 , PASA_asmbl_18021: 294188-297158
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_240 0.0 - - PREDICTED: uncharacterized protein LOC105647985 isoform X2 [Jatropha curcas]
2 Hb_004586_150 0.1009965902 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
3 Hb_000082_010 0.1217179255 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
4 Hb_000483_310 0.1227694138 - - PREDICTED: WD-40 repeat-containing protein MSI4-like [Jatropha curcas]
5 Hb_004970_140 0.1237064446 - - PREDICTED: uncharacterized protein LOC105633635 [Jatropha curcas]
6 Hb_002676_120 0.1309910031 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
7 Hb_009193_090 0.1313648026 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
8 Hb_021510_010 0.1352738571 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
9 Hb_129204_040 0.1369636378 - - PREDICTED: meiotic nuclear division protein 1 homolog isoform X1 [Jatropha curcas]
10 Hb_000163_090 0.1400938669 - - gamma-tubulin complex component, putative [Ricinus communis]
11 Hb_012733_070 0.1403390234 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
12 Hb_004137_100 0.1405854728 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
13 Hb_005333_060 0.1414923865 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
14 Hb_182782_010 0.1424548408 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000130_160 0.1437368145 - - PREDICTED: protein DJ-1 homolog B-like [Jatropha curcas]
16 Hb_002471_240 0.1441762741 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
17 Hb_010174_040 0.1450002476 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
18 Hb_133702_030 0.1459972698 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
19 Hb_001733_030 0.1462757033 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
20 Hb_002596_060 0.1474474959 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000184_240 Hb_000184_240 Hb_004586_150 Hb_004586_150 Hb_000184_240--Hb_004586_150 Hb_000082_010 Hb_000082_010 Hb_000184_240--Hb_000082_010 Hb_000483_310 Hb_000483_310 Hb_000184_240--Hb_000483_310 Hb_004970_140 Hb_004970_140 Hb_000184_240--Hb_004970_140 Hb_002676_120 Hb_002676_120 Hb_000184_240--Hb_002676_120 Hb_009193_090 Hb_009193_090 Hb_000184_240--Hb_009193_090 Hb_000579_070 Hb_000579_070 Hb_004586_150--Hb_000579_070 Hb_004586_150--Hb_002676_120 Hb_000963_040 Hb_000963_040 Hb_004586_150--Hb_000963_040 Hb_004137_100 Hb_004137_100 Hb_004586_150--Hb_004137_100 Hb_000261_210 Hb_000261_210 Hb_004586_150--Hb_000261_210 Hb_016777_040 Hb_016777_040 Hb_000082_010--Hb_016777_040 Hb_002471_240 Hb_002471_240 Hb_000082_010--Hb_002471_240 Hb_000373_080 Hb_000373_080 Hb_000082_010--Hb_000373_080 Hb_006501_010 Hb_006501_010 Hb_000082_010--Hb_006501_010 Hb_028872_070 Hb_028872_070 Hb_000082_010--Hb_028872_070 Hb_008114_040 Hb_008114_040 Hb_000082_010--Hb_008114_040 Hb_001660_100 Hb_001660_100 Hb_000483_310--Hb_001660_100 Hb_005137_040 Hb_005137_040 Hb_000483_310--Hb_005137_040 Hb_021510_010 Hb_021510_010 Hb_000483_310--Hb_021510_010 Hb_003037_020 Hb_003037_020 Hb_000483_310--Hb_003037_020 Hb_005918_010 Hb_005918_010 Hb_000483_310--Hb_005918_010 Hb_000600_060 Hb_000600_060 Hb_000483_310--Hb_000600_060 Hb_000035_200 Hb_000035_200 Hb_004970_140--Hb_000035_200 Hb_000212_380 Hb_000212_380 Hb_004970_140--Hb_000212_380 Hb_002375_040 Hb_002375_040 Hb_004970_140--Hb_002375_040 Hb_002660_150 Hb_002660_150 Hb_004970_140--Hb_002660_150 Hb_011282_060 Hb_011282_060 Hb_004970_140--Hb_011282_060 Hb_000987_040 Hb_000987_040 Hb_002676_120--Hb_000987_040 Hb_002676_120--Hb_009193_090 Hb_006570_160 Hb_006570_160 Hb_002676_120--Hb_006570_160 Hb_000395_280 Hb_000395_280 Hb_002676_120--Hb_000395_280 Hb_005754_040 Hb_005754_040 Hb_002676_120--Hb_005754_040 Hb_005333_060 Hb_005333_060 Hb_002676_120--Hb_005333_060 Hb_007545_120 Hb_007545_120 Hb_009193_090--Hb_007545_120 Hb_001633_080 Hb_001633_080 Hb_009193_090--Hb_001633_080 Hb_002686_200 Hb_002686_200 Hb_009193_090--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_009193_090--Hb_159809_070 Hb_009193_090--Hb_006570_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63371 0.700334 3.01782 2.40478 1.37286 2.28115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01245 0.513091 1.74503 3.76824 1.40234

CAGE analysis