Hb_000483_310

Information

Type -
Description -
Location Contig483: 270240-277841
Sequence    

Annotation

kegg
ID rcu:RCOM_0312320
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_012068986.1
description PREDICTED: WD-40 repeat-containing protein MSI4-like [Jatropha curcas]
swissprot
ID O22607
description WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3
trembl
ID A0A067L0P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24772 PE=4 SV=1
Gene Ontology
ID GO:0005730
description wd-40 repeat-containing protein msi4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_310 0.0 - - PREDICTED: WD-40 repeat-containing protein MSI4-like [Jatropha curcas]
2 Hb_001660_100 0.0978191877 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
3 Hb_005137_040 0.1046890039 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
4 Hb_021510_010 0.1047666721 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
5 Hb_003037_020 0.1062569292 - - hypothetical protein JCGZ_22910 [Jatropha curcas]
6 Hb_005918_010 0.1073825209 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
7 Hb_000600_060 0.1080099712 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
8 Hb_000441_220 0.1087102416 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000182_040 0.1093697214 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
10 Hb_002909_140 0.1099341164 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
11 Hb_001157_090 0.111315376 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
12 Hb_002169_050 0.1116909441 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
13 Hb_000836_460 0.111802283 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
14 Hb_005634_010 0.1119260355 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_002026_150 0.1122835133 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
16 Hb_000028_180 0.112644329 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
17 Hb_000366_200 0.1138312457 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
18 Hb_000329_060 0.1141388457 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
19 Hb_012506_030 0.1157377264 - - AP-2 complex subunit alpha, putative [Ricinus communis]
20 Hb_000460_080 0.1164849338 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]

Gene co-expression network

sample Hb_000483_310 Hb_000483_310 Hb_001660_100 Hb_001660_100 Hb_000483_310--Hb_001660_100 Hb_005137_040 Hb_005137_040 Hb_000483_310--Hb_005137_040 Hb_021510_010 Hb_021510_010 Hb_000483_310--Hb_021510_010 Hb_003037_020 Hb_003037_020 Hb_000483_310--Hb_003037_020 Hb_005918_010 Hb_005918_010 Hb_000483_310--Hb_005918_010 Hb_000600_060 Hb_000600_060 Hb_000483_310--Hb_000600_060 Hb_000260_470 Hb_000260_470 Hb_001660_100--Hb_000260_470 Hb_005271_040 Hb_005271_040 Hb_001660_100--Hb_005271_040 Hb_000853_150 Hb_000853_150 Hb_001660_100--Hb_000853_150 Hb_001369_300 Hb_001369_300 Hb_001660_100--Hb_001369_300 Hb_000663_060 Hb_000663_060 Hb_001660_100--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_001660_100--Hb_001828_180 Hb_005137_040--Hb_005918_010 Hb_000637_110 Hb_000637_110 Hb_005137_040--Hb_000637_110 Hb_012506_030 Hb_012506_030 Hb_005137_040--Hb_012506_030 Hb_105105_010 Hb_105105_010 Hb_005137_040--Hb_105105_010 Hb_000088_170 Hb_000088_170 Hb_005137_040--Hb_000088_170 Hb_000441_220 Hb_000441_220 Hb_005137_040--Hb_000441_220 Hb_001586_030 Hb_001586_030 Hb_021510_010--Hb_001586_030 Hb_065500_020 Hb_065500_020 Hb_021510_010--Hb_065500_020 Hb_001105_020 Hb_001105_020 Hb_021510_010--Hb_001105_020 Hb_003058_260 Hb_003058_260 Hb_021510_010--Hb_003058_260 Hb_021510_010--Hb_003037_020 Hb_011377_040 Hb_011377_040 Hb_021510_010--Hb_011377_040 Hb_011883_020 Hb_011883_020 Hb_003037_020--Hb_011883_020 Hb_003228_110 Hb_003228_110 Hb_003037_020--Hb_003228_110 Hb_003037_020--Hb_003058_260 Hb_000243_260 Hb_000243_260 Hb_003037_020--Hb_000243_260 Hb_002071_070 Hb_002071_070 Hb_003037_020--Hb_002071_070 Hb_005918_010--Hb_012506_030 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_001153_190 Hb_001153_190 Hb_005918_010--Hb_001153_190 Hb_005918_010--Hb_105105_010 Hb_005918_010--Hb_000441_220 Hb_000460_080 Hb_000460_080 Hb_000600_060--Hb_000460_080 Hb_000963_040 Hb_000963_040 Hb_000600_060--Hb_000963_040 Hb_000120_280 Hb_000120_280 Hb_000600_060--Hb_000120_280 Hb_000352_300 Hb_000352_300 Hb_000600_060--Hb_000352_300 Hb_001141_310 Hb_001141_310 Hb_000600_060--Hb_001141_310 Hb_000477_050 Hb_000477_050 Hb_000600_060--Hb_000477_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39551 2.83952 5.01142 4.4262 2.88466 3.84509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98759 2.0256 4.99171 6.92622 2.23558

CAGE analysis