Hb_004586_150

Information

Type -
Description -
Location Contig4586: 172337-183861
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10430g
description POPTRDRAFT_551641; hypothetical protein
nr
ID XP_012067971.1
description PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15869 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43526: 172306-173118 , PASA_asmbl_43527: 173211-181242 , PASA_asmbl_43528: 174607-175967 , PASA_asmbl_43529: 182755-183518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_150 0.0 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
2 Hb_000579_070 0.0901348071 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
3 Hb_000184_240 0.1009965902 - - PREDICTED: uncharacterized protein LOC105647985 isoform X2 [Jatropha curcas]
4 Hb_002676_120 0.1025392871 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
5 Hb_000963_040 0.1148228884 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
6 Hb_004137_100 0.1158317127 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
7 Hb_000261_210 0.1194735574 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_000152_790 0.120500365 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
9 Hb_000739_240 0.1212843194 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_000487_180 0.1213446065 - - PREDICTED: post-GPI attachment to proteins factor 3 isoform X1 [Jatropha curcas]
11 Hb_006501_010 0.1215616254 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
12 Hb_000056_160 0.122025837 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
13 Hb_009193_090 0.1223625596 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
14 Hb_000082_010 0.1243380286 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
15 Hb_000987_040 0.1252978119 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
16 Hb_004228_120 0.1259236122 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
17 Hb_016347_020 0.12725816 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
18 Hb_001450_020 0.1293860107 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
19 Hb_030982_030 0.1309378918 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
20 Hb_002749_080 0.1318942649 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004586_150 Hb_004586_150 Hb_000579_070 Hb_000579_070 Hb_004586_150--Hb_000579_070 Hb_000184_240 Hb_000184_240 Hb_004586_150--Hb_000184_240 Hb_002676_120 Hb_002676_120 Hb_004586_150--Hb_002676_120 Hb_000963_040 Hb_000963_040 Hb_004586_150--Hb_000963_040 Hb_004137_100 Hb_004137_100 Hb_004586_150--Hb_004137_100 Hb_000261_210 Hb_000261_210 Hb_004586_150--Hb_000261_210 Hb_000056_160 Hb_000056_160 Hb_000579_070--Hb_000056_160 Hb_003687_210 Hb_003687_210 Hb_000579_070--Hb_003687_210 Hb_002749_080 Hb_002749_080 Hb_000579_070--Hb_002749_080 Hb_000579_070--Hb_000261_210 Hb_000787_060 Hb_000787_060 Hb_000579_070--Hb_000787_060 Hb_000082_010 Hb_000082_010 Hb_000184_240--Hb_000082_010 Hb_000483_310 Hb_000483_310 Hb_000184_240--Hb_000483_310 Hb_004970_140 Hb_004970_140 Hb_000184_240--Hb_004970_140 Hb_000184_240--Hb_002676_120 Hb_009193_090 Hb_009193_090 Hb_000184_240--Hb_009193_090 Hb_000987_040 Hb_000987_040 Hb_002676_120--Hb_000987_040 Hb_002676_120--Hb_009193_090 Hb_006570_160 Hb_006570_160 Hb_002676_120--Hb_006570_160 Hb_000395_280 Hb_000395_280 Hb_002676_120--Hb_000395_280 Hb_005754_040 Hb_005754_040 Hb_002676_120--Hb_005754_040 Hb_005333_060 Hb_005333_060 Hb_002676_120--Hb_005333_060 Hb_030982_030 Hb_030982_030 Hb_000963_040--Hb_030982_030 Hb_023313_040 Hb_023313_040 Hb_000963_040--Hb_023313_040 Hb_000600_060 Hb_000600_060 Hb_000963_040--Hb_000600_060 Hb_003119_090 Hb_003119_090 Hb_000963_040--Hb_003119_090 Hb_001227_130 Hb_001227_130 Hb_000963_040--Hb_001227_130 Hb_016347_020 Hb_016347_020 Hb_000963_040--Hb_016347_020 Hb_004137_100--Hb_009193_090 Hb_004137_100--Hb_000184_240 Hb_004137_100--Hb_000600_060 Hb_007545_120 Hb_007545_120 Hb_004137_100--Hb_007545_120 Hb_002391_360 Hb_002391_360 Hb_004137_100--Hb_002391_360 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_001002_060 Hb_001002_060 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16818 1.97591 10.1243 7.29701 5.78484 4.70864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99469 2.11882 3.44939 8.67975 3.50074

CAGE analysis