Hb_012738_030

Information

Type -
Description -
Location Contig12738: 22609-25290
Sequence    

Annotation

kegg
ID rcu:RCOM_1315060
description hypothetical protein
nr
ID XP_002518962.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYZ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1315060 PE=4 SV=1
Gene Ontology
ID GO:0006364
description tumor necrosis factor receptor superfamily member 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08356: 22651-25284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012738_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005892_020 0.129565948 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
3 Hb_000322_180 0.1341268715 - - recA family protein [Populus trichocarpa]
4 Hb_000088_050 0.1519637193 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
5 Hb_183867_010 0.1530945879 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
6 Hb_004116_170 0.155200616 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
7 Hb_001497_060 0.1558360835 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
8 Hb_001552_030 0.158306332 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_001882_130 0.1596133272 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
10 Hb_001085_290 0.1606123674 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
11 Hb_000022_160 0.1624744881 - - -
12 Hb_000334_260 0.1642623704 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
13 Hb_000853_400 0.1655118353 - - PREDICTED: CTP synthase [Jatropha curcas]
14 Hb_003939_040 0.1658806797 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
15 Hb_001160_070 0.167023353 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
16 Hb_003471_020 0.167478577 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
17 Hb_007253_020 0.1679089992 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
18 Hb_084513_010 0.1704804714 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
19 Hb_092000_010 0.1710764646 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
20 Hb_004040_040 0.1714180955 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]

Gene co-expression network

sample Hb_012738_030 Hb_012738_030 Hb_005892_020 Hb_005892_020 Hb_012738_030--Hb_005892_020 Hb_000322_180 Hb_000322_180 Hb_012738_030--Hb_000322_180 Hb_000088_050 Hb_000088_050 Hb_012738_030--Hb_000088_050 Hb_183867_010 Hb_183867_010 Hb_012738_030--Hb_183867_010 Hb_004116_170 Hb_004116_170 Hb_012738_030--Hb_004116_170 Hb_001497_060 Hb_001497_060 Hb_012738_030--Hb_001497_060 Hb_000940_170 Hb_000940_170 Hb_005892_020--Hb_000940_170 Hb_021297_020 Hb_021297_020 Hb_005892_020--Hb_021297_020 Hb_000022_160 Hb_000022_160 Hb_005892_020--Hb_000022_160 Hb_001381_050 Hb_001381_050 Hb_005892_020--Hb_001381_050 Hb_003058_200 Hb_003058_200 Hb_005892_020--Hb_003058_200 Hb_002874_090 Hb_002874_090 Hb_000322_180--Hb_002874_090 Hb_092000_010 Hb_092000_010 Hb_000322_180--Hb_092000_010 Hb_000322_180--Hb_000088_050 Hb_084513_010 Hb_084513_010 Hb_000322_180--Hb_084513_010 Hb_003363_080 Hb_003363_080 Hb_000322_180--Hb_003363_080 Hb_000017_230 Hb_000017_230 Hb_000322_180--Hb_000017_230 Hb_001085_290 Hb_001085_290 Hb_000088_050--Hb_001085_290 Hb_085742_010 Hb_085742_010 Hb_000088_050--Hb_085742_010 Hb_000088_050--Hb_000017_230 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_000088_050--Hb_092000_010 Hb_000088_050--Hb_001381_050 Hb_004094_020 Hb_004094_020 Hb_183867_010--Hb_004094_020 Hb_013358_050 Hb_013358_050 Hb_183867_010--Hb_013358_050 Hb_132101_010 Hb_132101_010 Hb_183867_010--Hb_132101_010 Hb_003994_220 Hb_003994_220 Hb_183867_010--Hb_003994_220 Hb_031527_080 Hb_031527_080 Hb_183867_010--Hb_031527_080 Hb_022092_010 Hb_022092_010 Hb_183867_010--Hb_022092_010 Hb_000237_040 Hb_000237_040 Hb_004116_170--Hb_000237_040 Hb_055062_040 Hb_055062_040 Hb_004116_170--Hb_055062_040 Hb_004116_170--Hb_183867_010 Hb_004116_170--Hb_021297_020 Hb_002928_090 Hb_002928_090 Hb_004116_170--Hb_002928_090 Hb_126976_010 Hb_126976_010 Hb_004116_170--Hb_126976_010 Hb_000334_260 Hb_000334_260 Hb_001497_060--Hb_000334_260 Hb_075315_010 Hb_075315_010 Hb_001497_060--Hb_075315_010 Hb_000723_010 Hb_000723_010 Hb_001497_060--Hb_000723_010 Hb_001160_070 Hb_001160_070 Hb_001497_060--Hb_001160_070 Hb_004837_280 Hb_004837_280 Hb_001497_060--Hb_004837_280 Hb_001497_060--Hb_013358_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5532 15.1329 16.7162 30.1185 5.95117 30.1726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.36687 3.1814 14.4188 34.4733 17.4201

CAGE analysis