Hb_084513_010

Information

Type -
Description -
Location Contig84513: 4142-5044
Sequence    

Annotation

kegg
ID rcu:RCOM_0963890
description structural maintenance of chromosomes 5 smc5, putative
nr
ID XP_012065615.1
description PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
swissprot
ID Q9LFS8
description Structural maintenance of chromosomes protein 5 OS=Arabidopsis thaliana GN=SMC5 PE=2 SV=1
trembl
ID A0A067LH91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16866 PE=4 SV=1
Gene Ontology
ID GO:0009506
description structural maintenance of chromosomes protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084513_010 0.0 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
2 Hb_000258_040 0.1243157099 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
3 Hb_000322_180 0.1255532377 - - recA family protein [Populus trichocarpa]
4 Hb_001160_070 0.1319525553 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
5 Hb_002874_090 0.1358843127 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
6 Hb_001307_240 0.1377456485 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
7 Hb_000334_260 0.1393610538 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
8 Hb_006502_030 0.1413341633 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
9 Hb_000017_230 0.1469798817 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
10 Hb_092000_010 0.1495668305 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
11 Hb_121089_030 0.1523599135 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
12 Hb_003998_010 0.1527111322 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
13 Hb_002995_040 0.1531249592 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
14 Hb_000116_150 0.1534439815 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
15 Hb_010042_030 0.1540223774 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
16 Hb_029695_050 0.1563644713 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
17 Hb_016347_020 0.1563754305 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
18 Hb_001552_030 0.1565817323 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
19 Hb_003910_010 0.1576022742 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
20 Hb_030736_060 0.1595178745 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_084513_010 Hb_084513_010 Hb_000258_040 Hb_000258_040 Hb_084513_010--Hb_000258_040 Hb_000322_180 Hb_000322_180 Hb_084513_010--Hb_000322_180 Hb_001160_070 Hb_001160_070 Hb_084513_010--Hb_001160_070 Hb_002874_090 Hb_002874_090 Hb_084513_010--Hb_002874_090 Hb_001307_240 Hb_001307_240 Hb_084513_010--Hb_001307_240 Hb_000334_260 Hb_000334_260 Hb_084513_010--Hb_000334_260 Hb_001347_050 Hb_001347_050 Hb_000258_040--Hb_001347_050 Hb_004055_050 Hb_004055_050 Hb_000258_040--Hb_004055_050 Hb_000679_100 Hb_000679_100 Hb_000258_040--Hb_000679_100 Hb_007919_110 Hb_007919_110 Hb_000258_040--Hb_007919_110 Hb_000085_260 Hb_000085_260 Hb_000258_040--Hb_000085_260 Hb_010672_020 Hb_010672_020 Hb_000258_040--Hb_010672_020 Hb_000322_180--Hb_002874_090 Hb_092000_010 Hb_092000_010 Hb_000322_180--Hb_092000_010 Hb_000088_050 Hb_000088_050 Hb_000322_180--Hb_000088_050 Hb_003363_080 Hb_003363_080 Hb_000322_180--Hb_003363_080 Hb_000017_230 Hb_000017_230 Hb_000322_180--Hb_000017_230 Hb_001160_070--Hb_000334_260 Hb_002995_040 Hb_002995_040 Hb_001160_070--Hb_002995_040 Hb_001497_060 Hb_001497_060 Hb_001160_070--Hb_001497_060 Hb_083799_010 Hb_083799_010 Hb_001160_070--Hb_083799_010 Hb_001160_070--Hb_001307_240 Hb_002836_100 Hb_002836_100 Hb_001160_070--Hb_002836_100 Hb_002045_250 Hb_002045_250 Hb_002874_090--Hb_002045_250 Hb_002874_090--Hb_092000_010 Hb_004544_040 Hb_004544_040 Hb_002874_090--Hb_004544_040 Hb_007062_030 Hb_007062_030 Hb_002874_090--Hb_007062_030 Hb_001552_030 Hb_001552_030 Hb_002874_090--Hb_001552_030 Hb_002874_090--Hb_000017_230 Hb_001558_040 Hb_001558_040 Hb_001307_240--Hb_001558_040 Hb_004837_280 Hb_004837_280 Hb_001307_240--Hb_004837_280 Hb_002007_260 Hb_002007_260 Hb_001307_240--Hb_002007_260 Hb_001307_240--Hb_001552_030 Hb_001085_290 Hb_001085_290 Hb_001307_240--Hb_001085_290 Hb_001307_240--Hb_000017_230 Hb_000334_260--Hb_002995_040 Hb_000334_260--Hb_001497_060 Hb_007747_170 Hb_007747_170 Hb_000334_260--Hb_007747_170 Hb_000334_260--Hb_001307_240 Hb_000334_260--Hb_002874_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82882 1.36543 2.01517 3.1501 0.344005 1.60935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.848984 0.266737 0.656441 2.19683 0.963231

CAGE analysis