Hb_000322_180

Information

Type -
Description -
Location Contig322: 173599-179930
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15100g
description POPTRDRAFT_717577; recA family protein
nr
ID XP_002308284.1
description recA family protein [Populus trichocarpa]
swissprot
ID Q9ZUP2
description DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2 SV=2
trembl
ID B9HDY6
description RecA family protein OS=Populus trichocarpa GN=POPTR_0006s15100g PE=3 SV=1
Gene Ontology
ID GO:0003697
description dna repair protein reca homolog mitochondrial-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34057: 168618-172847 , PASA_asmbl_34058: 169385-172847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_180 0.0 - - recA family protein [Populus trichocarpa]
2 Hb_002874_090 0.1087813698 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
3 Hb_092000_010 0.115211346 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
4 Hb_000088_050 0.1234725201 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
5 Hb_084513_010 0.1255532377 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
6 Hb_003363_080 0.1286992511 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
7 Hb_000017_230 0.1314618683 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
8 Hb_012738_030 0.1341268715 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007062_030 0.1341953212 - - hypothetical protein VITISV_039033 [Vitis vinifera]
10 Hb_007253_020 0.134773378 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
11 Hb_004544_040 0.1363563626 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
12 Hb_000537_140 0.136848463 - - lupus la ribonucleoprotein, putative [Ricinus communis]
13 Hb_000116_150 0.1375240876 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
14 Hb_001552_030 0.1408283901 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
15 Hb_006502_030 0.1418456751 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
16 Hb_015941_040 0.1427417106 - - L-galactono-1,4-lactone dehydrogenase, mitochondrial [Cucumis sativus]
17 Hb_161994_030 0.1462810846 - - unnamed protein product [Vitis vinifera]
18 Hb_001307_240 0.14692324 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
19 Hb_012506_010 0.1479057523 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
20 Hb_085742_010 0.1480697827 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]

Gene co-expression network

sample Hb_000322_180 Hb_000322_180 Hb_002874_090 Hb_002874_090 Hb_000322_180--Hb_002874_090 Hb_092000_010 Hb_092000_010 Hb_000322_180--Hb_092000_010 Hb_000088_050 Hb_000088_050 Hb_000322_180--Hb_000088_050 Hb_084513_010 Hb_084513_010 Hb_000322_180--Hb_084513_010 Hb_003363_080 Hb_003363_080 Hb_000322_180--Hb_003363_080 Hb_000017_230 Hb_000017_230 Hb_000322_180--Hb_000017_230 Hb_002045_250 Hb_002045_250 Hb_002874_090--Hb_002045_250 Hb_002874_090--Hb_092000_010 Hb_004544_040 Hb_004544_040 Hb_002874_090--Hb_004544_040 Hb_007062_030 Hb_007062_030 Hb_002874_090--Hb_007062_030 Hb_001552_030 Hb_001552_030 Hb_002874_090--Hb_001552_030 Hb_002874_090--Hb_000017_230 Hb_092000_010--Hb_000017_230 Hb_092000_010--Hb_002045_250 Hb_001935_160 Hb_001935_160 Hb_092000_010--Hb_001935_160 Hb_001085_290 Hb_001085_290 Hb_092000_010--Hb_001085_290 Hb_092000_010--Hb_000088_050 Hb_085742_010 Hb_085742_010 Hb_092000_010--Hb_085742_010 Hb_000088_050--Hb_001085_290 Hb_000088_050--Hb_085742_010 Hb_000088_050--Hb_000017_230 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_001381_050 Hb_001381_050 Hb_000088_050--Hb_001381_050 Hb_000258_040 Hb_000258_040 Hb_084513_010--Hb_000258_040 Hb_001160_070 Hb_001160_070 Hb_084513_010--Hb_001160_070 Hb_084513_010--Hb_002874_090 Hb_001307_240 Hb_001307_240 Hb_084513_010--Hb_001307_240 Hb_000334_260 Hb_000334_260 Hb_084513_010--Hb_000334_260 Hb_003363_080--Hb_007062_030 Hb_000170_090 Hb_000170_090 Hb_003363_080--Hb_000170_090 Hb_005765_010 Hb_005765_010 Hb_003363_080--Hb_005765_010 Hb_001377_310 Hb_001377_310 Hb_003363_080--Hb_001377_310 Hb_003177_020 Hb_003177_020 Hb_003363_080--Hb_003177_020 Hb_000981_030 Hb_000981_030 Hb_003363_080--Hb_000981_030 Hb_121089_030 Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_000017_230--Hb_001552_030 Hb_000017_230--Hb_001085_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17611 2.96401 3.62663 3.84484 0.726926 4.75118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01295 1.03026 1.4711 3.73064 2.00794

CAGE analysis