Hb_000022_160

Information

Type -
Description -
Location Contig22: 247763-254289
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0008270
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22609: 242581-262422 , PASA_asmbl_22611: 242581-263801 , PASA_asmbl_22613: 246763-247201 , PASA_asmbl_22615: 236253-260587 , PASA_asmbl_22617: 237196-260343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_160 0.0 - - -
2 Hb_015292_060 0.092211956 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
3 Hb_000890_070 0.0971534346 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
4 Hb_003340_010 0.1000594144 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
5 Hb_001366_270 0.1029600115 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
6 Hb_009486_090 0.1038127128 - - RNA binding protein, putative [Ricinus communis]
7 Hb_001377_350 0.1047904561 - - PREDICTED: exportin-2 [Jatropha curcas]
8 Hb_011925_020 0.1090318284 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_001377_100 0.1093004554 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
10 Hb_005181_050 0.1100894005 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
11 Hb_001341_010 0.1101209183 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
12 Hb_000088_050 0.1104918298 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
13 Hb_000196_060 0.1106578812 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
14 Hb_000358_050 0.1118330653 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
15 Hb_001085_290 0.1120048329 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
16 Hb_011485_060 0.1134220315 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
17 Hb_002749_060 0.1142340611 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
18 Hb_005892_020 0.1151456219 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
19 Hb_000922_030 0.1154776161 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
20 Hb_000809_230 0.117520066 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000022_160 Hb_000022_160 Hb_015292_060 Hb_015292_060 Hb_000022_160--Hb_015292_060 Hb_000890_070 Hb_000890_070 Hb_000022_160--Hb_000890_070 Hb_003340_010 Hb_003340_010 Hb_000022_160--Hb_003340_010 Hb_001366_270 Hb_001366_270 Hb_000022_160--Hb_001366_270 Hb_009486_090 Hb_009486_090 Hb_000022_160--Hb_009486_090 Hb_001377_350 Hb_001377_350 Hb_000022_160--Hb_001377_350 Hb_001377_100 Hb_001377_100 Hb_015292_060--Hb_001377_100 Hb_015292_060--Hb_009486_090 Hb_015292_060--Hb_000890_070 Hb_135572_010 Hb_135572_010 Hb_015292_060--Hb_135572_010 Hb_000922_030 Hb_000922_030 Hb_015292_060--Hb_000922_030 Hb_002749_060 Hb_002749_060 Hb_000890_070--Hb_002749_060 Hb_004450_070 Hb_004450_070 Hb_000890_070--Hb_004450_070 Hb_004048_120 Hb_004048_120 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_000890_070--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_000890_070--Hb_002874_110 Hb_003340_010--Hb_002874_110 Hb_003517_070 Hb_003517_070 Hb_003340_010--Hb_003517_070 Hb_011537_060 Hb_011537_060 Hb_003340_010--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_003340_010--Hb_007933_040 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060 Hb_005000_090 Hb_005000_090 Hb_001366_270--Hb_005000_090 Hb_005181_050 Hb_005181_050 Hb_001366_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_001366_270--Hb_000809_250 Hb_001341_010 Hb_001341_010 Hb_001366_270--Hb_001341_010 Hb_001511_180 Hb_001511_180 Hb_001366_270--Hb_001511_180 Hb_000540_100 Hb_000540_100 Hb_001366_270--Hb_000540_100 Hb_006031_010 Hb_006031_010 Hb_009486_090--Hb_006031_010 Hb_009486_090--Hb_001377_100 Hb_001124_050 Hb_001124_050 Hb_009486_090--Hb_001124_050 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_001951_170 Hb_001951_170 Hb_009486_090--Hb_001951_170 Hb_009486_170 Hb_009486_170 Hb_009486_090--Hb_009486_170 Hb_000809_230 Hb_000809_230 Hb_001377_350--Hb_000809_230 Hb_001377_350--Hb_002749_060 Hb_002890_130 Hb_002890_130 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_003544_050 Hb_003544_050 Hb_001377_350--Hb_003544_050 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20515 4.15292 3.23958 4.42617 1.2014 3.87431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40105 1.22207 2.83859 6.74113 7.12486

CAGE analysis