Hb_015292_060

Information

Type -
Description -
Location Contig15292: 36279-38042
Sequence    

Annotation

kegg
ID rcu:RCOM_0447170
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088123.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
swissprot
ID Q9FKR3
description Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
trembl
ID B9T3S4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0447170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015292_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
2 Hb_001377_100 0.0798151124 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
3 Hb_009486_090 0.0821248955 - - RNA binding protein, putative [Ricinus communis]
4 Hb_000890_070 0.086630427 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
5 Hb_135572_010 0.0901762765 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
6 Hb_000022_160 0.092211956 - - -
7 Hb_000922_030 0.0926115135 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
8 Hb_001377_350 0.0934495824 - - PREDICTED: exportin-2 [Jatropha curcas]
9 Hb_004143_160 0.0948129321 - - SAB, putative [Ricinus communis]
10 Hb_002025_330 0.0967209053 - - peptide transporter, putative [Ricinus communis]
11 Hb_000358_050 0.0969628341 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
12 Hb_126976_010 0.0970468971 - - -
13 Hb_004048_120 0.0988914704 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
14 Hb_007472_090 0.0994532286 - - unnamed protein product [Coffea canephora]
15 Hb_003280_020 0.0998639867 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
16 Hb_011485_060 0.0998992279 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
17 Hb_000484_010 0.1016488192 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
18 Hb_004208_050 0.1018205776 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
19 Hb_000589_380 0.1027737706 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
20 Hb_003340_010 0.1029260553 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]

Gene co-expression network

sample Hb_015292_060 Hb_015292_060 Hb_001377_100 Hb_001377_100 Hb_015292_060--Hb_001377_100 Hb_009486_090 Hb_009486_090 Hb_015292_060--Hb_009486_090 Hb_000890_070 Hb_000890_070 Hb_015292_060--Hb_000890_070 Hb_135572_010 Hb_135572_010 Hb_015292_060--Hb_135572_010 Hb_000022_160 Hb_000022_160 Hb_015292_060--Hb_000022_160 Hb_000922_030 Hb_000922_030 Hb_015292_060--Hb_000922_030 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230 Hb_009486_090--Hb_006031_010 Hb_001124_050 Hb_001124_050 Hb_009486_090--Hb_001124_050 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_001951_170 Hb_001951_170 Hb_009486_090--Hb_001951_170 Hb_009486_170 Hb_009486_170 Hb_009486_090--Hb_009486_170 Hb_002749_060 Hb_002749_060 Hb_000890_070--Hb_002749_060 Hb_004450_070 Hb_004450_070 Hb_000890_070--Hb_004450_070 Hb_004048_120 Hb_004048_120 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_003340_010 Hb_003340_010 Hb_000890_070--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_000890_070--Hb_002874_110 Hb_007994_010 Hb_007994_010 Hb_135572_010--Hb_007994_010 Hb_004143_160 Hb_004143_160 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_135572_010--Hb_000922_030 Hb_000022_160--Hb_000890_070 Hb_000022_160--Hb_003340_010 Hb_001366_270 Hb_001366_270 Hb_000022_160--Hb_001366_270 Hb_000022_160--Hb_009486_090 Hb_001377_350 Hb_001377_350 Hb_000022_160--Hb_001377_350 Hb_000922_030--Hb_000358_050 Hb_002025_330 Hb_002025_330 Hb_000922_030--Hb_002025_330 Hb_000922_030--Hb_004143_160 Hb_000365_240 Hb_000365_240 Hb_000922_030--Hb_000365_240 Hb_007472_090 Hb_007472_090 Hb_000922_030--Hb_007472_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.5062 0.774262 0.402075 0.760966 0.446163 0.535754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.311609 0.163447 0.579033 1.09874 1.33319

CAGE analysis