Hb_000940_170

Information

Type -
Description -
Location Contig940: 258965-264992
Sequence    

Annotation

kegg
ID mdm:103428372
description uncharacterized LOC103428372
nr
ID CAN77165.1
description hypothetical protein VITISV_029834 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6I128
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01920 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nucleoporin nup188 homolog isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63149: 255990-261104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_170 0.0 - - hypothetical protein VITISV_029834 [Vitis vinifera]
2 Hb_005892_020 0.1015145035 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
3 Hb_003058_200 0.124487629 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
4 Hb_000800_110 0.1296666633 - - NAD dehydrogenase, putative [Ricinus communis]
5 Hb_021297_020 0.1298243899 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_169586_010 0.1376590559 - - Acid phosphatase/vanadium-dependent haloperoxidase-related protein [Theobroma cacao]
7 Hb_002851_010 0.1428825373 - - sugar transporter, putative [Ricinus communis]
8 Hb_011032_010 0.1464437644 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
9 Hb_002026_070 0.147242234 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
10 Hb_000649_060 0.1511215246 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
11 Hb_132101_010 0.15296203 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
12 Hb_001148_080 0.1531121791 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
13 Hb_020805_180 0.1534649863 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
14 Hb_055062_040 0.1535484732 - - ceramidase, putative [Ricinus communis]
15 Hb_002027_190 0.1540974832 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
16 Hb_001781_020 0.156738907 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
17 Hb_000157_070 0.1604717808 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
18 Hb_000723_010 0.1617262263 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_135959_010 0.1629934955 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
20 Hb_000019_170 0.1635314692 - - PREDICTED: alpha-mannosidase [Jatropha curcas]

Gene co-expression network

sample Hb_000940_170 Hb_000940_170 Hb_005892_020 Hb_005892_020 Hb_000940_170--Hb_005892_020 Hb_003058_200 Hb_003058_200 Hb_000940_170--Hb_003058_200 Hb_000800_110 Hb_000800_110 Hb_000940_170--Hb_000800_110 Hb_021297_020 Hb_021297_020 Hb_000940_170--Hb_021297_020 Hb_169586_010 Hb_169586_010 Hb_000940_170--Hb_169586_010 Hb_002851_010 Hb_002851_010 Hb_000940_170--Hb_002851_010 Hb_005892_020--Hb_021297_020 Hb_000022_160 Hb_000022_160 Hb_005892_020--Hb_000022_160 Hb_001381_050 Hb_001381_050 Hb_005892_020--Hb_001381_050 Hb_005892_020--Hb_003058_200 Hb_012738_030 Hb_012738_030 Hb_005892_020--Hb_012738_030 Hb_002072_010 Hb_002072_010 Hb_003058_200--Hb_002072_010 Hb_000674_010 Hb_000674_010 Hb_003058_200--Hb_000674_010 Hb_000019_170 Hb_000019_170 Hb_003058_200--Hb_000019_170 Hb_003058_200--Hb_021297_020 Hb_003058_200--Hb_002851_010 Hb_003125_180 Hb_003125_180 Hb_003058_200--Hb_003125_180 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000035_010 Hb_000035_010 Hb_000800_110--Hb_000035_010 Hb_000022_170 Hb_000022_170 Hb_000800_110--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_000800_110--Hb_000022_150 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000950_060 Hb_000950_060 Hb_000800_110--Hb_000950_060 Hb_000649_060 Hb_000649_060 Hb_021297_020--Hb_000649_060 Hb_027445_020 Hb_027445_020 Hb_021297_020--Hb_027445_020 Hb_021297_020--Hb_000674_010 Hb_000701_030 Hb_000701_030 Hb_021297_020--Hb_000701_030 Hb_001226_130 Hb_001226_130 Hb_021297_020--Hb_001226_130 Hb_002026_070 Hb_002026_070 Hb_169586_010--Hb_002026_070 Hb_000330_150 Hb_000330_150 Hb_169586_010--Hb_000330_150 Hb_002928_200 Hb_002928_200 Hb_169586_010--Hb_002928_200 Hb_169586_010--Hb_003058_200 Hb_000768_160 Hb_000768_160 Hb_169586_010--Hb_000768_160 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002027_190 Hb_002027_190 Hb_002851_010--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_002851_010--Hb_020805_180 Hb_000157_070 Hb_000157_070 Hb_002851_010--Hb_000157_070 Hb_002851_010--Hb_000649_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.527891 2.07613 1.42045 3.48533 1.42537 3.20603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.577929 0.454117 1.40944 6.63143 4.4999

CAGE analysis