Hb_005892_020

Information

Type -
Description -
Location Contig5892: 14631-20627
Sequence    

Annotation

kegg
ID rcu:RCOM_1168260
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_012069880.1
description PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
swissprot
ID Q86TV6
description Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3
trembl
ID A0A067KW50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02365 PE=4 SV=1
Gene Ontology
ID GO:0016740
description tetratricopeptide repeat protein 7a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50117: 15723-18231 , PASA_asmbl_50119: 20380-21011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005892_020 0.0 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
2 Hb_000940_170 0.1015145035 - - hypothetical protein VITISV_029834 [Vitis vinifera]
3 Hb_021297_020 0.1122123053 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
4 Hb_000022_160 0.1151456219 - - -
5 Hb_001381_050 0.1164803752 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_003058_200 0.1217633709 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
7 Hb_012738_030 0.129565948 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001366_270 0.130021194 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
9 Hb_000890_070 0.1316697244 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
10 Hb_055062_040 0.1324999985 - - ceramidase, putative [Ricinus communis]
11 Hb_000800_110 0.1329778344 - - NAD dehydrogenase, putative [Ricinus communis]
12 Hb_000035_010 0.1344812463 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
13 Hb_001781_020 0.1362924462 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
14 Hb_001085_290 0.1363777436 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
15 Hb_000649_060 0.1369762932 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
16 Hb_004116_170 0.1373011453 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
17 Hb_003280_020 0.1386496479 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
18 Hb_015292_060 0.1388608158 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
19 Hb_004048_120 0.1395941461 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
20 Hb_001497_060 0.1396924687 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]

Gene co-expression network

sample Hb_005892_020 Hb_005892_020 Hb_000940_170 Hb_000940_170 Hb_005892_020--Hb_000940_170 Hb_021297_020 Hb_021297_020 Hb_005892_020--Hb_021297_020 Hb_000022_160 Hb_000022_160 Hb_005892_020--Hb_000022_160 Hb_001381_050 Hb_001381_050 Hb_005892_020--Hb_001381_050 Hb_003058_200 Hb_003058_200 Hb_005892_020--Hb_003058_200 Hb_012738_030 Hb_012738_030 Hb_005892_020--Hb_012738_030 Hb_000940_170--Hb_003058_200 Hb_000800_110 Hb_000800_110 Hb_000940_170--Hb_000800_110 Hb_000940_170--Hb_021297_020 Hb_169586_010 Hb_169586_010 Hb_000940_170--Hb_169586_010 Hb_002851_010 Hb_002851_010 Hb_000940_170--Hb_002851_010 Hb_000649_060 Hb_000649_060 Hb_021297_020--Hb_000649_060 Hb_027445_020 Hb_027445_020 Hb_021297_020--Hb_027445_020 Hb_000674_010 Hb_000674_010 Hb_021297_020--Hb_000674_010 Hb_000701_030 Hb_000701_030 Hb_021297_020--Hb_000701_030 Hb_021297_020--Hb_003058_200 Hb_001226_130 Hb_001226_130 Hb_021297_020--Hb_001226_130 Hb_015292_060 Hb_015292_060 Hb_000022_160--Hb_015292_060 Hb_000890_070 Hb_000890_070 Hb_000022_160--Hb_000890_070 Hb_003340_010 Hb_003340_010 Hb_000022_160--Hb_003340_010 Hb_001366_270 Hb_001366_270 Hb_000022_160--Hb_001366_270 Hb_009486_090 Hb_009486_090 Hb_000022_160--Hb_009486_090 Hb_001377_350 Hb_001377_350 Hb_000022_160--Hb_001377_350 Hb_007994_010 Hb_007994_010 Hb_001381_050--Hb_007994_010 Hb_001085_290 Hb_001085_290 Hb_001381_050--Hb_001085_290 Hb_005402_040 Hb_005402_040 Hb_001381_050--Hb_005402_040 Hb_000066_150 Hb_000066_150 Hb_001381_050--Hb_000066_150 Hb_000088_050 Hb_000088_050 Hb_001381_050--Hb_000088_050 Hb_001341_180 Hb_001341_180 Hb_001381_050--Hb_001341_180 Hb_002072_010 Hb_002072_010 Hb_003058_200--Hb_002072_010 Hb_003058_200--Hb_000674_010 Hb_000019_170 Hb_000019_170 Hb_003058_200--Hb_000019_170 Hb_003058_200--Hb_002851_010 Hb_003125_180 Hb_003125_180 Hb_003058_200--Hb_003125_180 Hb_000322_180 Hb_000322_180 Hb_012738_030--Hb_000322_180 Hb_012738_030--Hb_000088_050 Hb_183867_010 Hb_183867_010 Hb_012738_030--Hb_183867_010 Hb_004116_170 Hb_004116_170 Hb_012738_030--Hb_004116_170 Hb_001497_060 Hb_001497_060 Hb_012738_030--Hb_001497_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73737 3.48855 2.66653 4.93403 1.79801 5.07721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.72129 0.604608 2.1216 6.8399 5.70486

CAGE analysis