Hb_138462_010

Information

Type -
Description -
Location Contig138462: 52-586
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010930047.1
description PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID F6H5P2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138462_010 0.0 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
2 Hb_141296_010 0.1868421197 - - -
3 Hb_002611_030 0.2066559431 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
4 Hb_017014_010 0.2239344063 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
5 Hb_060458_010 0.2272171197 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001711_050 0.2316745069 - - -
7 Hb_007527_070 0.2345929459 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
8 Hb_000256_070 0.2386637592 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
9 Hb_160715_010 0.2395893936 - - -
10 Hb_081517_010 0.2460243682 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
11 Hb_060391_010 0.2495726734 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_011645_030 0.2548813501 - - -
13 Hb_148131_010 0.256803965 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
14 Hb_010003_010 0.2574613272 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
15 Hb_000928_050 0.2591843117 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
16 Hb_094437_040 0.260274365 - - ankyrin repeat family protein, partial [Manihot esculenta]
17 Hb_000168_010 0.2620978135 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
18 Hb_006422_030 0.2626285662 - - -
19 Hb_089202_010 0.2628993492 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
20 Hb_000133_070 0.2637791127 - - -

Gene co-expression network

sample Hb_138462_010 Hb_138462_010 Hb_141296_010 Hb_141296_010 Hb_138462_010--Hb_141296_010 Hb_002611_030 Hb_002611_030 Hb_138462_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_138462_010--Hb_017014_010 Hb_060458_010 Hb_060458_010 Hb_138462_010--Hb_060458_010 Hb_001711_050 Hb_001711_050 Hb_138462_010--Hb_001711_050 Hb_007527_070 Hb_007527_070 Hb_138462_010--Hb_007527_070 Hb_141296_010--Hb_060458_010 Hb_000098_300 Hb_000098_300 Hb_141296_010--Hb_000098_300 Hb_060391_010 Hb_060391_010 Hb_141296_010--Hb_060391_010 Hb_007333_040 Hb_007333_040 Hb_141296_010--Hb_007333_040 Hb_006960_010 Hb_006960_010 Hb_141296_010--Hb_006960_010 Hb_002611_030--Hb_017014_010 Hb_100137_010 Hb_100137_010 Hb_002611_030--Hb_100137_010 Hb_004466_060 Hb_004466_060 Hb_002611_030--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_002611_030--Hb_048702_010 Hb_009083_030 Hb_009083_030 Hb_002611_030--Hb_009083_030 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010 Hb_000889_100 Hb_000889_100 Hb_017014_010--Hb_000889_100 Hb_017014_010--Hb_010003_010 Hb_017014_010--Hb_100137_010 Hb_017014_010--Hb_048702_010 Hb_000077_290 Hb_000077_290 Hb_017014_010--Hb_000077_290 Hb_002126_020 Hb_002126_020 Hb_060458_010--Hb_002126_020 Hb_006422_030 Hb_006422_030 Hb_060458_010--Hb_006422_030 Hb_000082_020 Hb_000082_020 Hb_060458_010--Hb_000082_020 Hb_005318_020 Hb_005318_020 Hb_060458_010--Hb_005318_020 Hb_114079_010 Hb_114079_010 Hb_060458_010--Hb_114079_010 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_000928_050 Hb_000928_050 Hb_001711_050--Hb_000928_050 Hb_000256_070 Hb_000256_070 Hb_001711_050--Hb_000256_070 Hb_010534_050 Hb_010534_050 Hb_001711_050--Hb_010534_050 Hb_006910_050 Hb_006910_050 Hb_007527_070--Hb_006910_050 Hb_007527_070--Hb_002611_030 Hb_000168_010 Hb_000168_010 Hb_007527_070--Hb_000168_010 Hb_130367_010 Hb_130367_010 Hb_007527_070--Hb_130367_010 Hb_047691_010 Hb_047691_010 Hb_007527_070--Hb_047691_010 Hb_121694_010 Hb_121694_010 Hb_007527_070--Hb_121694_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.1114 21.2938 55.2153 348.661 45.0765 284.342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 118.219 98.1007 56.8936

CAGE analysis