Hb_121694_010

Information

Type -
Description -
Location Contig121694: 2187-2620
Sequence    

Annotation

kegg
ID rcu:RCOM_0642610
description structural constituent of ribosome, putative
nr
ID XP_002521939.1
description structural constituent of ribosome, putative [Ricinus communis]
swissprot
ID Q8R6M7
description 50S ribosomal protein L9 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=rplI PE=3 SV=1
trembl
ID B9S7H0
description Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_0642610 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121694_010 0.0 - - structural constituent of ribosome, putative [Ricinus communis]
2 Hb_009083_030 0.1563393994 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
3 Hb_184541_010 0.1684160034 - - PREDICTED: selT-like protein [Jatropha curcas]
4 Hb_047691_010 0.1734555741 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
5 Hb_010984_040 0.1742084219 - - hypothetical protein M569_17286, partial [Genlisea aurea]
6 Hb_004125_070 0.1772295837 - - Glycolipid transfer protein, putative [Ricinus communis]
7 Hb_001059_140 0.1895551514 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
8 Hb_100137_010 0.1990171244 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
9 Hb_188313_010 0.201182524 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
10 Hb_048702_010 0.2046005922 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
11 Hb_004079_050 0.211041422 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
12 Hb_017014_020 0.2121308748 - - -
13 Hb_007527_070 0.2183500899 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
14 Hb_004033_020 0.2190892839 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
15 Hb_030992_010 0.221331686 - - acetylornithine aminotransferase, putative [Ricinus communis]
16 Hb_011918_010 0.2241665991 - - hypothetical protein glysoja_041948 [Glycine soja]
17 Hb_000603_070 0.2241737593 - - -
18 Hb_007441_090 0.2255911357 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
19 Hb_005854_050 0.2262437679 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006634_110 0.226637755 - - BnaC04g40780D [Brassica napus]

Gene co-expression network

sample Hb_121694_010 Hb_121694_010 Hb_009083_030 Hb_009083_030 Hb_121694_010--Hb_009083_030 Hb_184541_010 Hb_184541_010 Hb_121694_010--Hb_184541_010 Hb_047691_010 Hb_047691_010 Hb_121694_010--Hb_047691_010 Hb_010984_040 Hb_010984_040 Hb_121694_010--Hb_010984_040 Hb_004125_070 Hb_004125_070 Hb_121694_010--Hb_004125_070 Hb_001059_140 Hb_001059_140 Hb_121694_010--Hb_001059_140 Hb_188313_010 Hb_188313_010 Hb_009083_030--Hb_188313_010 Hb_182713_020 Hb_182713_020 Hb_009083_030--Hb_182713_020 Hb_100137_010 Hb_100137_010 Hb_009083_030--Hb_100137_010 Hb_009083_030--Hb_184541_010 Hb_017014_020 Hb_017014_020 Hb_009083_030--Hb_017014_020 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030 Hb_184541_010--Hb_004125_070 Hb_184541_010--Hb_188313_010 Hb_011918_010 Hb_011918_010 Hb_184541_010--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_184541_010--Hb_008185_020 Hb_184541_010--Hb_100137_010 Hb_047691_010--Hb_001059_140 Hb_041601_010 Hb_041601_010 Hb_047691_010--Hb_041601_010 Hb_047691_010--Hb_017014_020 Hb_047691_010--Hb_009083_030 Hb_007527_070 Hb_007527_070 Hb_047691_010--Hb_007527_070 Hb_004525_050 Hb_004525_050 Hb_010984_040--Hb_004525_050 Hb_010984_040--Hb_100137_010 Hb_006634_110 Hb_006634_110 Hb_010984_040--Hb_006634_110 Hb_010984_040--Hb_009083_030 Hb_048702_010 Hb_048702_010 Hb_010984_040--Hb_048702_010 Hb_001247_030 Hb_001247_030 Hb_004125_070--Hb_001247_030 Hb_004125_070--Hb_011918_010 Hb_004125_070--Hb_008185_020 Hb_004125_070--Hb_188313_010 Hb_004125_070--Hb_009083_030 Hb_001059_140--Hb_048702_010 Hb_001059_140--Hb_017014_020 Hb_099990_020 Hb_099990_020 Hb_001059_140--Hb_099990_020 Hb_001059_140--Hb_184541_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45163 8.92341 16.2082 143.012 0.926513 37.1768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.43259 13.642 4.7633 35.6477 14.5245

CAGE analysis