Hb_099990_020

Information

Type -
Description -
Location Contig99990: 14953-16478
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28940g
description hypothetical protein
nr
ID XP_006382159.1
description hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9N689
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28940g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64912: 15274-16364
cDNA
(Sanger)
(ID:Location)		 047_H04.ab1: 15277-16364 , 051_E23.ab1: 15284-16364

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099990_020 0.0 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
2 Hb_001059_140 0.1941672552 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
3 Hb_001486_050 0.2045645628 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
4 Hb_004525_080 0.2192283314 - - Sugar transporter ERD6-like 6 [Morus notabilis]
5 Hb_080081_010 0.2316396743 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
6 Hb_006816_110 0.231645873 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
7 Hb_001379_070 0.2328627634 - - hypothetical protein JCGZ_16377 [Jatropha curcas]
8 Hb_007741_090 0.2358817568 - - Autophagy-related 8f -like protein [Gossypium arboreum]
9 Hb_000521_070 0.2395813783 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
10 Hb_000139_110 0.2430270633 - - PREDICTED: mavicyanin [Jatropha curcas]
11 Hb_184541_010 0.2433545154 - - PREDICTED: selT-like protein [Jatropha curcas]
12 Hb_000893_010 0.2452107989 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
13 Hb_017014_020 0.2467116021 - - -
14 Hb_009249_020 0.2470992608 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
15 Hb_004525_050 0.2549605418 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
16 Hb_000244_140 0.2575923367 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
17 Hb_000172_470 0.2615495124 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
18 Hb_000092_050 0.2634568371 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
19 Hb_007575_090 0.2672646613 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
20 Hb_188313_010 0.2697775361 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_099990_020 Hb_099990_020 Hb_001059_140 Hb_001059_140 Hb_099990_020--Hb_001059_140 Hb_001486_050 Hb_001486_050 Hb_099990_020--Hb_001486_050 Hb_004525_080 Hb_004525_080 Hb_099990_020--Hb_004525_080 Hb_080081_010 Hb_080081_010 Hb_099990_020--Hb_080081_010 Hb_006816_110 Hb_006816_110 Hb_099990_020--Hb_006816_110 Hb_001379_070 Hb_001379_070 Hb_099990_020--Hb_001379_070 Hb_047691_010 Hb_047691_010 Hb_001059_140--Hb_047691_010 Hb_048702_010 Hb_048702_010 Hb_001059_140--Hb_048702_010 Hb_017014_020 Hb_017014_020 Hb_001059_140--Hb_017014_020 Hb_121694_010 Hb_121694_010 Hb_001059_140--Hb_121694_010 Hb_184541_010 Hb_184541_010 Hb_001059_140--Hb_184541_010 Hb_001486_050--Hb_184541_010 Hb_007741_090 Hb_007741_090 Hb_001486_050--Hb_007741_090 Hb_001486_050--Hb_004525_080 Hb_007575_090 Hb_007575_090 Hb_001486_050--Hb_007575_090 Hb_000139_110 Hb_000139_110 Hb_001486_050--Hb_000139_110 Hb_001486_050--Hb_006816_110 Hb_066514_010 Hb_066514_010 Hb_004525_080--Hb_066514_010 Hb_004525_080--Hb_007575_090 Hb_002900_100 Hb_002900_100 Hb_004525_080--Hb_002900_100 Hb_007441_090 Hb_007441_090 Hb_004525_080--Hb_007441_090 Hb_177152_010 Hb_177152_010 Hb_004525_080--Hb_177152_010 Hb_000244_140 Hb_000244_140 Hb_080081_010--Hb_000244_140 Hb_000092_050 Hb_000092_050 Hb_080081_010--Hb_000092_050 Hb_080081_010--Hb_006816_110 Hb_005479_050 Hb_005479_050 Hb_080081_010--Hb_005479_050 Hb_000172_470 Hb_000172_470 Hb_080081_010--Hb_000172_470 Hb_000220_020 Hb_000220_020 Hb_080081_010--Hb_000220_020 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_000500_070 Hb_000500_070 Hb_006816_110--Hb_000500_070 Hb_000521_070 Hb_000521_070 Hb_006816_110--Hb_000521_070 Hb_006816_110--Hb_000172_470 Hb_003972_040 Hb_003972_040 Hb_001379_070--Hb_003972_040 Hb_018691_010 Hb_018691_010 Hb_001379_070--Hb_018691_010 Hb_005854_050 Hb_005854_050 Hb_001379_070--Hb_005854_050 Hb_104169_010 Hb_104169_010 Hb_001379_070--Hb_104169_010 Hb_034280_010 Hb_034280_010 Hb_001379_070--Hb_034280_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.270927 0.171116 0.352731 7.55622 1.02197 1.84072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0594691 0 0.72441 0.591503

CAGE analysis