Hb_104169_010

Information

Type -
Description -
Location Contig104169: 1-547
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104169_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_072290_010 0.1599204927 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
3 Hb_004705_090 0.1726254435 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000365_040 0.1952441256 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
5 Hb_009411_030 0.1988221319 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
6 Hb_000860_030 0.2124012241 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008536_030 0.2179693859 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
8 Hb_007575_090 0.2187118269 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
9 Hb_000893_010 0.2187904638 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
10 Hb_003582_010 0.219457535 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
11 Hb_001357_030 0.219960557 - - hypothetical protein F383_04880 [Gossypium arboreum]
12 Hb_000705_070 0.2213342007 - - conserved hypothetical protein [Ricinus communis]
13 Hb_156850_040 0.2213714962 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
14 Hb_001247_080 0.223202753 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000302_110 0.2260068474 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_080081_010 0.2261053829 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
17 Hb_000521_070 0.2308707122 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
18 Hb_000302_100 0.2320399441 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
19 Hb_001322_010 0.2340374992 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
20 Hb_001584_040 0.2367602761 - - PREDICTED: uncharacterized protein LOC105125166 [Populus euphratica]

Gene co-expression network

sample Hb_104169_010 Hb_104169_010 Hb_072290_010 Hb_072290_010 Hb_104169_010--Hb_072290_010 Hb_004705_090 Hb_004705_090 Hb_104169_010--Hb_004705_090 Hb_000365_040 Hb_000365_040 Hb_104169_010--Hb_000365_040 Hb_009411_030 Hb_009411_030 Hb_104169_010--Hb_009411_030 Hb_000860_030 Hb_000860_030 Hb_104169_010--Hb_000860_030 Hb_008536_030 Hb_008536_030 Hb_104169_010--Hb_008536_030 Hb_048183_010 Hb_048183_010 Hb_072290_010--Hb_048183_010 Hb_072290_010--Hb_004705_090 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_133648_010 Hb_133648_010 Hb_072290_010--Hb_133648_010 Hb_178711_010 Hb_178711_010 Hb_072290_010--Hb_178711_010 Hb_000893_010 Hb_000893_010 Hb_004705_090--Hb_000893_010 Hb_004705_090--Hb_009411_030 Hb_001269_570 Hb_001269_570 Hb_004705_090--Hb_001269_570 Hb_004705_090--Hb_048183_010 Hb_108216_030 Hb_108216_030 Hb_000365_040--Hb_108216_030 Hb_005396_030 Hb_005396_030 Hb_000365_040--Hb_005396_030 Hb_000733_090 Hb_000733_090 Hb_000365_040--Hb_000733_090 Hb_001247_080 Hb_001247_080 Hb_000365_040--Hb_001247_080 Hb_000365_040--Hb_000860_030 Hb_111985_090 Hb_111985_090 Hb_000365_040--Hb_111985_090 Hb_001248_180 Hb_001248_180 Hb_009411_030--Hb_001248_180 Hb_010926_020 Hb_010926_020 Hb_009411_030--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_009411_030--Hb_057018_010 Hb_008196_010 Hb_008196_010 Hb_009411_030--Hb_008196_010 Hb_081228_010 Hb_081228_010 Hb_009411_030--Hb_081228_010 Hb_045786_010 Hb_045786_010 Hb_009411_030--Hb_045786_010 Hb_001322_010 Hb_001322_010 Hb_000860_030--Hb_001322_010 Hb_000705_070 Hb_000705_070 Hb_000860_030--Hb_000705_070 Hb_022597_010 Hb_022597_010 Hb_000860_030--Hb_022597_010 Hb_001255_030 Hb_001255_030 Hb_000860_030--Hb_001255_030 Hb_156850_040 Hb_156850_040 Hb_000860_030--Hb_156850_040 Hb_000172_150 Hb_000172_150 Hb_000860_030--Hb_000172_150 Hb_003582_010 Hb_003582_010 Hb_008536_030--Hb_003582_010 Hb_000959_150 Hb_000959_150 Hb_008536_030--Hb_000959_150 Hb_059226_020 Hb_059226_020 Hb_008536_030--Hb_059226_020 Hb_008536_030--Hb_022597_010 Hb_080068_010 Hb_080068_010 Hb_008536_030--Hb_080068_010 Hb_002054_090 Hb_002054_090 Hb_008536_030--Hb_002054_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.523269 5.84417 1.22525 26.3617 1.19713 3.05018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.51111 0.252161

CAGE analysis