Hb_178711_010

Information

Type -
Description -
Location Contig178711: 74-2888
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G094000g
description hypothetical protein
nr
ID XP_007154143.1
description hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7C7K5
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G094000g PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178711_010 0.0 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
2 Hb_029622_070 0.1352787487 - - -
3 Hb_003531_010 0.1636841166 - - scab resistance family protein [Populus trichocarpa]
4 Hb_003925_130 0.165170369 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_000304_040 0.1906215222 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
6 Hb_002081_180 0.2095241676 - - hypothetical protein PRUPE_ppa006101mg [Prunus persica]
7 Hb_048183_010 0.2119995732 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_003906_030 0.212263096 - - mads box protein, putative [Ricinus communis]
9 Hb_072290_010 0.2163067932 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
10 Hb_005127_040 0.2198111664 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
11 Hb_002984_020 0.2215177496 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
12 Hb_001414_120 0.2259535905 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
13 Hb_000960_020 0.2284302841 - - -
14 Hb_133648_010 0.2368852773 - - -
15 Hb_000562_010 0.2391792245 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
16 Hb_007416_080 0.2456673087 - - -
17 Hb_002984_030 0.2473557498 - - -
18 Hb_000164_130 0.247719697 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
19 Hb_004458_010 0.2518084822 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
20 Hb_055993_010 0.2547770984 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_178711_010 Hb_178711_010 Hb_029622_070 Hb_029622_070 Hb_178711_010--Hb_029622_070 Hb_003531_010 Hb_003531_010 Hb_178711_010--Hb_003531_010 Hb_003925_130 Hb_003925_130 Hb_178711_010--Hb_003925_130 Hb_000304_040 Hb_000304_040 Hb_178711_010--Hb_000304_040 Hb_002081_180 Hb_002081_180 Hb_178711_010--Hb_002081_180 Hb_048183_010 Hb_048183_010 Hb_178711_010--Hb_048183_010 Hb_029622_070--Hb_002081_180 Hb_029622_070--Hb_003925_130 Hb_029622_070--Hb_003531_010 Hb_029622_070--Hb_048183_010 Hb_002984_030 Hb_002984_030 Hb_029622_070--Hb_002984_030 Hb_003531_010--Hb_002081_180 Hb_116367_010 Hb_116367_010 Hb_003531_010--Hb_116367_010 Hb_005127_040 Hb_005127_040 Hb_003531_010--Hb_005127_040 Hb_072290_010 Hb_072290_010 Hb_003531_010--Hb_072290_010 Hb_003925_130--Hb_000304_040 Hb_001414_120 Hb_001414_120 Hb_003925_130--Hb_001414_120 Hb_000769_050 Hb_000769_050 Hb_003925_130--Hb_000769_050 Hb_000925_020 Hb_000925_020 Hb_003925_130--Hb_000925_020 Hb_002548_010 Hb_002548_010 Hb_003925_130--Hb_002548_010 Hb_000304_040--Hb_001414_120 Hb_004458_010 Hb_004458_010 Hb_000304_040--Hb_004458_010 Hb_001957_050 Hb_001957_050 Hb_000304_040--Hb_001957_050 Hb_000304_040--Hb_000769_050 Hb_000373_110 Hb_000373_110 Hb_000304_040--Hb_000373_110 Hb_002081_180--Hb_005127_040 Hb_027287_010 Hb_027287_010 Hb_002081_180--Hb_027287_010 Hb_002081_180--Hb_116367_010 Hb_007416_080 Hb_007416_080 Hb_048183_010--Hb_007416_080 Hb_133648_010 Hb_133648_010 Hb_048183_010--Hb_133648_010 Hb_048183_010--Hb_072290_010 Hb_001708_010 Hb_001708_010 Hb_048183_010--Hb_001708_010 Hb_000164_130 Hb_000164_130 Hb_048183_010--Hb_000164_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.463621 0.0737752 0.833391 0 0.263899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis