Hb_003531_010

Information

Type -
Description -
Location Contig3531: 12366-16726
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11730g
description POPTRDRAFT_566442; scab resistance family protein
nr
ID XP_002315858.2
description scab resistance family protein [Populus trichocarpa]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9HW18
description Scab resistance family protein OS=Populus trichocarpa GN=POPTR_0010s11730g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003531_010 0.0 - - scab resistance family protein [Populus trichocarpa]
2 Hb_002081_180 0.1433726681 - - hypothetical protein PRUPE_ppa006101mg [Prunus persica]
3 Hb_178711_010 0.1636841166 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
4 Hb_116367_010 0.1901171906 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
5 Hb_005127_040 0.2158248197 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
6 Hb_072290_010 0.2364277062 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
7 Hb_029622_070 0.2455242322 - - -
8 Hb_003641_010 0.2517884358 - - Pectinesterase-3 precursor, putative [Ricinus communis]
9 Hb_048183_010 0.2566537487 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
10 Hb_133648_010 0.2575993947 - - -
11 Hb_097783_010 0.267144903 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
12 Hb_157968_010 0.2726527525 - - Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_002078_190 0.2778313831 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000304_040 0.2791925253 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
15 Hb_000960_020 0.2929239805 - - -
16 Hb_027287_010 0.2932567874 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003925_130 0.2976275033 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_003906_030 0.2986250062 - - mads box protein, putative [Ricinus communis]
19 Hb_002820_130 0.2996142683 - - -
20 Hb_007416_080 0.3020671392 - - -

Gene co-expression network

sample Hb_003531_010 Hb_003531_010 Hb_002081_180 Hb_002081_180 Hb_003531_010--Hb_002081_180 Hb_178711_010 Hb_178711_010 Hb_003531_010--Hb_178711_010 Hb_116367_010 Hb_116367_010 Hb_003531_010--Hb_116367_010 Hb_005127_040 Hb_005127_040 Hb_003531_010--Hb_005127_040 Hb_072290_010 Hb_072290_010 Hb_003531_010--Hb_072290_010 Hb_029622_070 Hb_029622_070 Hb_003531_010--Hb_029622_070 Hb_002081_180--Hb_005127_040 Hb_002081_180--Hb_178711_010 Hb_002081_180--Hb_029622_070 Hb_027287_010 Hb_027287_010 Hb_002081_180--Hb_027287_010 Hb_002081_180--Hb_116367_010 Hb_178711_010--Hb_029622_070 Hb_003925_130 Hb_003925_130 Hb_178711_010--Hb_003925_130 Hb_000304_040 Hb_000304_040 Hb_178711_010--Hb_000304_040 Hb_048183_010 Hb_048183_010 Hb_178711_010--Hb_048183_010 Hb_003641_010 Hb_003641_010 Hb_116367_010--Hb_003641_010 Hb_116367_010--Hb_027287_010 Hb_148658_010 Hb_148658_010 Hb_116367_010--Hb_148658_010 Hb_013040_010 Hb_013040_010 Hb_116367_010--Hb_013040_010 Hb_001660_140 Hb_001660_140 Hb_116367_010--Hb_001660_140 Hb_005127_040--Hb_000304_040 Hb_004458_010 Hb_004458_010 Hb_005127_040--Hb_004458_010 Hb_005127_040--Hb_178711_010 Hb_000983_180 Hb_000983_180 Hb_005127_040--Hb_000983_180 Hb_104169_010 Hb_104169_010 Hb_072290_010--Hb_104169_010 Hb_072290_010--Hb_048183_010 Hb_004705_090 Hb_004705_090 Hb_072290_010--Hb_004705_090 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_133648_010 Hb_133648_010 Hb_072290_010--Hb_133648_010 Hb_072290_010--Hb_178711_010 Hb_029622_070--Hb_003925_130 Hb_029622_070--Hb_048183_010 Hb_002984_030 Hb_002984_030 Hb_029622_070--Hb_002984_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0074949 0 0.0158838 0 0.00661832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis