Hb_148658_010

Information

Type -
Description -
Location Contig148658: 53-291
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12278: 118-601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148658_010 0.0 - - -
2 Hb_002078_190 0.1990704844 - - conserved hypothetical protein [Ricinus communis]
3 Hb_106873_020 0.2105229855 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_027287_010 0.2172887854 - - conserved hypothetical protein [Ricinus communis]
5 Hb_157968_010 0.2174172426 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_000066_180 0.2239942688 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
7 Hb_116367_010 0.2241417034 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
8 Hb_162090_010 0.2339260188 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
9 Hb_001810_020 0.2376813207 - - -
10 Hb_114079_010 0.2386650888 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
11 Hb_000193_030 0.2490270497 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
12 Hb_001708_010 0.256255884 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
13 Hb_022614_010 0.2565408823 - - -
14 Hb_046120_010 0.2574142253 - - -
15 Hb_048183_010 0.2587973042 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
16 Hb_001712_080 0.261564373 - - -
17 Hb_002972_060 0.2629150877 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_002126_020 0.2696537552 - - ferrochelatase [Medicago truncatula]
19 Hb_060054_010 0.2702904897 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
20 Hb_025905_020 0.2717623699 - - major allergen Pru ar 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_148658_010 Hb_148658_010 Hb_002078_190 Hb_002078_190 Hb_148658_010--Hb_002078_190 Hb_106873_020 Hb_106873_020 Hb_148658_010--Hb_106873_020 Hb_027287_010 Hb_027287_010 Hb_148658_010--Hb_027287_010 Hb_157968_010 Hb_157968_010 Hb_148658_010--Hb_157968_010 Hb_000066_180 Hb_000066_180 Hb_148658_010--Hb_000066_180 Hb_116367_010 Hb_116367_010 Hb_148658_010--Hb_116367_010 Hb_002078_190--Hb_157968_010 Hb_007889_050 Hb_007889_050 Hb_002078_190--Hb_007889_050 Hb_001708_010 Hb_001708_010 Hb_002078_190--Hb_001708_010 Hb_001950_040 Hb_001950_040 Hb_002078_190--Hb_001950_040 Hb_002078_190--Hb_116367_010 Hb_000589_230 Hb_000589_230 Hb_106873_020--Hb_000589_230 Hb_060054_010 Hb_060054_010 Hb_106873_020--Hb_060054_010 Hb_003025_060 Hb_003025_060 Hb_106873_020--Hb_003025_060 Hb_081815_010 Hb_081815_010 Hb_106873_020--Hb_081815_010 Hb_005723_070 Hb_005723_070 Hb_106873_020--Hb_005723_070 Hb_174547_010 Hb_174547_010 Hb_027287_010--Hb_174547_010 Hb_027287_010--Hb_116367_010 Hb_000193_030 Hb_000193_030 Hb_027287_010--Hb_000193_030 Hb_002081_180 Hb_002081_180 Hb_027287_010--Hb_002081_180 Hb_027287_010--Hb_000066_180 Hb_157968_010--Hb_001708_010 Hb_048183_010 Hb_048183_010 Hb_157968_010--Hb_048183_010 Hb_157968_010--Hb_116367_010 Hb_001810_020 Hb_001810_020 Hb_157968_010--Hb_001810_020 Hb_001907_090 Hb_001907_090 Hb_000066_180--Hb_001907_090 Hb_000066_180--Hb_000193_030 Hb_000340_330 Hb_000340_330 Hb_000066_180--Hb_000340_330 Hb_005318_020 Hb_005318_020 Hb_000066_180--Hb_005318_020 Hb_094132_010 Hb_094132_010 Hb_000066_180--Hb_094132_010 Hb_003531_010 Hb_003531_010 Hb_116367_010--Hb_003531_010 Hb_003641_010 Hb_003641_010 Hb_116367_010--Hb_003641_010 Hb_013040_010 Hb_013040_010 Hb_116367_010--Hb_013040_010 Hb_001660_140 Hb_001660_140 Hb_116367_010--Hb_001660_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51553 81.5286 21.1739 246.326 0 315.324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0504 6.20403 0 6.37514 2.09565

CAGE analysis