Hb_081815_010

Information

Type -
Description -
Location Contig81815: 654-1010
Sequence    

Annotation

kegg
ID vvi:100266863
description uncharacterized LOC100266863
nr
ID XP_002271667.2
description PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HZN0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03870 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC100266863

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081815_010 0.0 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
2 Hb_163132_010 0.1861916236 - - -
3 Hb_007356_010 0.1864137654 - - CTV.19 [Citrus trifoliata]
4 Hb_007290_020 0.1868242467 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
5 Hb_068804_060 0.1868377227 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
6 Hb_005723_070 0.1869702217 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
7 Hb_000300_140 0.187452963 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
8 Hb_033312_110 0.1989074927 - - -
9 Hb_000130_170 0.2034228426 - - -
10 Hb_004907_030 0.2085578655 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
11 Hb_000876_010 0.2137661456 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
12 Hb_002972_060 0.215704723 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
13 Hb_106873_020 0.2162602333 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
14 Hb_003025_060 0.2165395109 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
15 Hb_000589_230 0.217509205 - - unknown [Picea sitchensis]
16 Hb_000671_040 0.2219677542 - - -
17 Hb_005318_010 0.2252107635 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
18 Hb_000291_130 0.2284349263 - - -
19 Hb_013040_010 0.2405780086 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
20 Hb_002450_130 0.2419399121 - - hypothetical protein JCGZ_06565 [Jatropha curcas]

Gene co-expression network

sample Hb_081815_010 Hb_081815_010 Hb_163132_010 Hb_163132_010 Hb_081815_010--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_081815_010--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_081815_010--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_081815_010--Hb_068804_060 Hb_005723_070 Hb_005723_070 Hb_081815_010--Hb_005723_070 Hb_000300_140 Hb_000300_140 Hb_081815_010--Hb_000300_140 Hb_163132_010--Hb_007356_010 Hb_163132_010--Hb_007290_020 Hb_163132_010--Hb_068804_060 Hb_163132_010--Hb_000300_140 Hb_033312_110 Hb_033312_110 Hb_163132_010--Hb_033312_110 Hb_004907_030 Hb_004907_030 Hb_163132_010--Hb_004907_030 Hb_007356_010--Hb_007290_020 Hb_007356_010--Hb_068804_060 Hb_007356_010--Hb_000300_140 Hb_007356_010--Hb_033312_110 Hb_007356_010--Hb_004907_030 Hb_007290_020--Hb_068804_060 Hb_007290_020--Hb_000300_140 Hb_007290_020--Hb_033312_110 Hb_007290_020--Hb_004907_030 Hb_068804_060--Hb_000300_140 Hb_068804_060--Hb_033312_110 Hb_068804_060--Hb_004907_030 Hb_000130_170 Hb_000130_170 Hb_005723_070--Hb_000130_170 Hb_000876_010 Hb_000876_010 Hb_005723_070--Hb_000876_010 Hb_002972_060 Hb_002972_060 Hb_005723_070--Hb_002972_060 Hb_002450_130 Hb_002450_130 Hb_005723_070--Hb_002450_130 Hb_005723_070--Hb_033312_110 Hb_005723_070--Hb_000300_140 Hb_000300_140--Hb_033312_110 Hb_000300_140--Hb_004907_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.42776 0 0.264401 3.8776 0 5.68339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis