Hb_001907_090

Information

Type -
Description -
Location Contig1907: 172320-172780
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19020: 172216-172912 , PASA_asmbl_19021: 173164-173722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001907_090 0.0 - - -
2 Hb_004958_040 0.162008491 - - -
3 Hb_000684_480 0.1817863765 transcription factor TF Family: Orphans -
4 Hb_122567_020 0.1902932644 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
5 Hb_000066_180 0.198334255 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
6 Hb_001385_080 0.208269271 - - -
7 Hb_000084_130 0.2114540729 - - -
8 Hb_059952_010 0.211657962 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
9 Hb_007083_050 0.213596811 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
10 Hb_001579_040 0.214637693 - - -
11 Hb_000926_350 0.2193109111 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
12 Hb_000204_020 0.2211457424 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
13 Hb_000003_180 0.2213357533 - - conserved hypothetical protein [Ricinus communis]
14 Hb_071079_050 0.2213378628 - - -
15 Hb_005933_010 0.2213573031 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
16 Hb_187459_010 0.2253612527 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
17 Hb_001231_070 0.2282432583 - - -
18 Hb_000291_130 0.2309024979 - - -
19 Hb_000617_170 0.2320402825 - - -
20 Hb_046120_010 0.234230658 - - -

Gene co-expression network

sample Hb_001907_090 Hb_001907_090 Hb_004958_040 Hb_004958_040 Hb_001907_090--Hb_004958_040 Hb_000684_480 Hb_000684_480 Hb_001907_090--Hb_000684_480 Hb_122567_020 Hb_122567_020 Hb_001907_090--Hb_122567_020 Hb_000066_180 Hb_000066_180 Hb_001907_090--Hb_000066_180 Hb_001385_080 Hb_001385_080 Hb_001907_090--Hb_001385_080 Hb_000084_130 Hb_000084_130 Hb_001907_090--Hb_000084_130 Hb_059952_010 Hb_059952_010 Hb_004958_040--Hb_059952_010 Hb_004958_040--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_004958_040--Hb_005933_010 Hb_000617_170 Hb_000617_170 Hb_004958_040--Hb_000617_170 Hb_000805_300 Hb_000805_300 Hb_004958_040--Hb_000805_300 Hb_000316_090 Hb_000316_090 Hb_000684_480--Hb_000316_090 Hb_003029_100 Hb_003029_100 Hb_000684_480--Hb_003029_100 Hb_000684_480--Hb_004958_040 Hb_124141_010 Hb_124141_010 Hb_000684_480--Hb_124141_010 Hb_075745_010 Hb_075745_010 Hb_000684_480--Hb_075745_010 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_000193_030 Hb_000193_030 Hb_000066_180--Hb_000193_030 Hb_000340_330 Hb_000340_330 Hb_000066_180--Hb_000340_330 Hb_005318_020 Hb_005318_020 Hb_000066_180--Hb_005318_020 Hb_148658_010 Hb_148658_010 Hb_000066_180--Hb_148658_010 Hb_094132_010 Hb_094132_010 Hb_000066_180--Hb_094132_010 Hb_001385_080--Hb_005933_010 Hb_001385_080--Hb_059952_010 Hb_001385_080--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_001385_080--Hb_001454_110 Hb_101151_030 Hb_101151_030 Hb_001385_080--Hb_101151_030 Hb_008096_020 Hb_008096_020 Hb_000084_130--Hb_008096_020 Hb_000084_130--Hb_005318_020 Hb_003656_150 Hb_003656_150 Hb_000084_130--Hb_003656_150 Hb_007083_050 Hb_007083_050 Hb_000084_130--Hb_007083_050 Hb_006995_010 Hb_006995_010 Hb_000084_130--Hb_006995_010 Hb_177103_010 Hb_177103_010 Hb_000084_130--Hb_177103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.643865 1.7959 0.777201 5.52505 0.248727 27.6106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17713 2.33233 0 1.09333 0

CAGE analysis