Hb_000316_090

Information

Type -
Description -
Location Contig316: 52655-53887
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33307: 52649-53246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_090 0.0 - - -
2 Hb_000002_030 0.1544650175 - - -
3 Hb_032531_050 0.167814294 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
4 Hb_034579_010 0.1863706845 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
5 Hb_145827_010 0.1877989993 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
6 Hb_000684_480 0.1918966808 transcription factor TF Family: Orphans -
7 Hb_001579_040 0.1942184949 - - -
8 Hb_032531_060 0.1972647604 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
9 Hb_000204_020 0.1980477769 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
10 Hb_001454_110 0.2048154726 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
11 Hb_032531_040 0.2085586777 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
12 Hb_000248_030 0.2101209233 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
13 Hb_000805_300 0.2157965949 - - -
14 Hb_005933_010 0.2194967953 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
15 Hb_002365_010 0.2211442778 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
16 Hb_001235_060 0.229227557 - - -
17 Hb_059952_010 0.2297451583 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
18 Hb_168737_010 0.2302942937 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003029_100 0.2318484884 - - -
20 Hb_122567_020 0.2348791581 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]

Gene co-expression network

sample Hb_000316_090 Hb_000316_090 Hb_000002_030 Hb_000002_030 Hb_000316_090--Hb_000002_030 Hb_032531_050 Hb_032531_050 Hb_000316_090--Hb_032531_050 Hb_034579_010 Hb_034579_010 Hb_000316_090--Hb_034579_010 Hb_145827_010 Hb_145827_010 Hb_000316_090--Hb_145827_010 Hb_000684_480 Hb_000684_480 Hb_000316_090--Hb_000684_480 Hb_001579_040 Hb_001579_040 Hb_000316_090--Hb_001579_040 Hb_000002_030--Hb_032531_050 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_101151_030 Hb_101151_030 Hb_000002_030--Hb_101151_030 Hb_001235_060 Hb_001235_060 Hb_000002_030--Hb_001235_060 Hb_032531_040 Hb_032531_040 Hb_032531_050--Hb_032531_040 Hb_001454_110 Hb_001454_110 Hb_032531_050--Hb_001454_110 Hb_000805_300 Hb_000805_300 Hb_032531_050--Hb_000805_300 Hb_032531_050--Hb_034579_010 Hb_032531_060 Hb_032531_060 Hb_034579_010--Hb_032531_060 Hb_005731_140 Hb_005731_140 Hb_034579_010--Hb_005731_140 Hb_124141_010 Hb_124141_010 Hb_034579_010--Hb_124141_010 Hb_005933_010 Hb_005933_010 Hb_034579_010--Hb_005933_010 Hb_168737_010 Hb_168737_010 Hb_034579_010--Hb_168737_010 Hb_059952_010 Hb_059952_010 Hb_145827_010--Hb_059952_010 Hb_145827_010--Hb_001579_040 Hb_145827_010--Hb_000002_030 Hb_145827_010--Hb_001454_110 Hb_001981_080 Hb_001981_080 Hb_145827_010--Hb_001981_080 Hb_001907_090 Hb_001907_090 Hb_000684_480--Hb_001907_090 Hb_003029_100 Hb_003029_100 Hb_000684_480--Hb_003029_100 Hb_004958_040 Hb_004958_040 Hb_000684_480--Hb_004958_040 Hb_000684_480--Hb_124141_010 Hb_075745_010 Hb_075745_010 Hb_000684_480--Hb_075745_010 Hb_000291_130 Hb_000291_130 Hb_001579_040--Hb_000291_130 Hb_001579_040--Hb_001454_110 Hb_001579_040--Hb_059952_010 Hb_001579_040--Hb_032531_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.460561 0 0 2.60966 0 26.5505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2856 2.29997 0.821905 0.399749 0

CAGE analysis