Hb_001981_080

Information

Type -
Description -
Location Contig1981: 99349-100077
Sequence    

Annotation

kegg
ID mus:103990311
description mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1
nr
ID XP_009407701.1
description PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
swissprot
ID -
description -
trembl
ID M0ZWZ2
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003844 PE=4 SV=1
Gene Ontology
ID GO:0000166
description mitochondrial trna-specific 2-thiouridylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19901: 98429-99820 , PASA_asmbl_19902: 99886-100099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001981_080 0.0 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
2 Hb_126398_010 0.1747853109 - - -
3 Hb_145827_010 0.2115693046 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
4 Hb_001544_020 0.2200418646 - - -
5 Hb_036285_010 0.2219858178 - - -
6 Hb_003702_050 0.2309191999 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
7 Hb_000003_690 0.2320852909 - - -
8 Hb_002365_010 0.2347223027 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
9 Hb_169488_010 0.2397684765 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
10 Hb_166548_010 0.239882975 - - hypothetical protein JCGZ_09681 [Jatropha curcas]
11 Hb_061581_010 0.2402641619 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
12 Hb_075642_010 0.253536069 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
13 Hb_021888_110 0.2560433344 - - -
14 Hb_135403_010 0.2701812438 - - HEV1.1 [Hevea brasiliensis]
15 Hb_002153_010 0.2766333719 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_000002_030 0.2769256946 - - -
17 Hb_005222_010 0.2769321283 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
18 Hb_162999_010 0.2790776105 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_001662_160 0.2838268531 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
20 Hb_096490_010 0.2851031259 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_001981_080 Hb_001981_080 Hb_126398_010 Hb_126398_010 Hb_001981_080--Hb_126398_010 Hb_145827_010 Hb_145827_010 Hb_001981_080--Hb_145827_010 Hb_001544_020 Hb_001544_020 Hb_001981_080--Hb_001544_020 Hb_036285_010 Hb_036285_010 Hb_001981_080--Hb_036285_010 Hb_003702_050 Hb_003702_050 Hb_001981_080--Hb_003702_050 Hb_000003_690 Hb_000003_690 Hb_001981_080--Hb_000003_690 Hb_162999_010 Hb_162999_010 Hb_126398_010--Hb_162999_010 Hb_126398_010--Hb_003702_050 Hb_135403_010 Hb_135403_010 Hb_126398_010--Hb_135403_010 Hb_000048_090 Hb_000048_090 Hb_126398_010--Hb_000048_090 Hb_002153_010 Hb_002153_010 Hb_126398_010--Hb_002153_010 Hb_059952_010 Hb_059952_010 Hb_145827_010--Hb_059952_010 Hb_000316_090 Hb_000316_090 Hb_145827_010--Hb_000316_090 Hb_001579_040 Hb_001579_040 Hb_145827_010--Hb_001579_040 Hb_000002_030 Hb_000002_030 Hb_145827_010--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_145827_010--Hb_001454_110 Hb_169488_010 Hb_169488_010 Hb_001544_020--Hb_169488_010 Hb_005222_010 Hb_005222_010 Hb_001544_020--Hb_005222_010 Hb_001544_020--Hb_003702_050 Hb_000931_030 Hb_000931_030 Hb_001544_020--Hb_000931_030 Hb_002365_010 Hb_002365_010 Hb_001544_020--Hb_002365_010 Hb_002205_200 Hb_002205_200 Hb_036285_010--Hb_002205_200 Hb_010588_010 Hb_010588_010 Hb_036285_010--Hb_010588_010 Hb_174107_010 Hb_174107_010 Hb_036285_010--Hb_174107_010 Hb_166548_010 Hb_166548_010 Hb_036285_010--Hb_166548_010 Hb_021888_110 Hb_021888_110 Hb_036285_010--Hb_021888_110 Hb_003702_050--Hb_169488_010 Hb_063511_010 Hb_063511_010 Hb_003702_050--Hb_063511_010 Hb_001951_280 Hb_001951_280 Hb_003702_050--Hb_001951_280 Hb_003702_050--Hb_000003_690 Hb_015091_010 Hb_015091_010 Hb_003702_050--Hb_015091_010 Hb_075642_010 Hb_075642_010 Hb_000003_690--Hb_075642_010 Hb_000003_690--Hb_002365_010 Hb_000003_690--Hb_169488_010 Hb_000003_690--Hb_126398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71068 0 0 0 0.489021 17.0416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99411 3.99634 0 0 0

CAGE analysis