Hb_021888_110

Information

Type -
Description -
Location Contig21888: 101721-102354
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_110 0.0 - - -
2 Hb_126112_010 0.1823425255 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
3 Hb_115919_010 0.1823843049 - - unknown [Lotus japonicus]
4 Hb_000025_100 0.1932582319 - - -
5 Hb_001095_060 0.2037396832 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
6 Hb_144101_010 0.2118935251 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
7 Hb_121236_010 0.2169131121 - - geranyl-diphosphate synthase [Hevea brasiliensis]
8 Hb_174107_010 0.2257494583 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
9 Hb_181320_010 0.2304634364 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
10 Hb_144898_010 0.2321450801 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
11 Hb_166548_010 0.2326244937 - - hypothetical protein JCGZ_09681 [Jatropha curcas]
12 Hb_036285_010 0.2341343547 - - -
13 Hb_027445_060 0.2372731982 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
14 Hb_005305_060 0.2375755362 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
15 Hb_061581_010 0.2380411296 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
16 Hb_176117_010 0.2384374962 - - Cold-inducible RNA-binding protein [Morus notabilis]
17 Hb_000832_240 0.2393467965 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000025_060 0.2412016146 - - unknown [Populus trichocarpa]
19 Hb_003061_010 0.2449379824 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
20 Hb_004968_060 0.2463033608 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021888_110 Hb_021888_110 Hb_126112_010 Hb_126112_010 Hb_021888_110--Hb_126112_010 Hb_115919_010 Hb_115919_010 Hb_021888_110--Hb_115919_010 Hb_000025_100 Hb_000025_100 Hb_021888_110--Hb_000025_100 Hb_001095_060 Hb_001095_060 Hb_021888_110--Hb_001095_060 Hb_144101_010 Hb_144101_010 Hb_021888_110--Hb_144101_010 Hb_121236_010 Hb_121236_010 Hb_021888_110--Hb_121236_010 Hb_000523_100 Hb_000523_100 Hb_126112_010--Hb_000523_100 Hb_003061_010 Hb_003061_010 Hb_126112_010--Hb_003061_010 Hb_126112_010--Hb_000025_100 Hb_156526_010 Hb_156526_010 Hb_126112_010--Hb_156526_010 Hb_003581_010 Hb_003581_010 Hb_126112_010--Hb_003581_010 Hb_115919_010--Hb_121236_010 Hb_027445_060 Hb_027445_060 Hb_115919_010--Hb_027445_060 Hb_115919_010--Hb_001095_060 Hb_061581_010 Hb_061581_010 Hb_115919_010--Hb_061581_010 Hb_005305_060 Hb_005305_060 Hb_115919_010--Hb_005305_060 Hb_000122_030 Hb_000122_030 Hb_115919_010--Hb_000122_030 Hb_121550_010 Hb_121550_010 Hb_000025_100--Hb_121550_010 Hb_008442_010 Hb_008442_010 Hb_000025_100--Hb_008442_010 Hb_147123_010 Hb_147123_010 Hb_000025_100--Hb_147123_010 Hb_071923_010 Hb_071923_010 Hb_000025_100--Hb_071923_010 Hb_001095_060--Hb_121236_010 Hb_001095_060--Hb_027445_060 Hb_068946_010 Hb_068946_010 Hb_001095_060--Hb_068946_010 Hb_001095_060--Hb_061581_010 Hb_001488_110 Hb_001488_110 Hb_001095_060--Hb_001488_110 Hb_029162_020 Hb_029162_020 Hb_144101_010--Hb_029162_020 Hb_048610_010 Hb_048610_010 Hb_144101_010--Hb_048610_010 Hb_036285_010 Hb_036285_010 Hb_144101_010--Hb_036285_010 Hb_144101_010--Hb_000025_100 Hb_000025_060 Hb_000025_060 Hb_144101_010--Hb_000025_060 Hb_121236_010--Hb_027445_060 Hb_121236_010--Hb_061581_010 Hb_121236_010--Hb_005305_060 Hb_135403_010 Hb_135403_010 Hb_121236_010--Hb_135403_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4134 1.0379 0.852536 2.08403 1.91802 36.4233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.02523 13.0647 0.754704 0.585411 0

CAGE analysis