Hb_008442_010

Information

Type -
Description -
Location Contig8442: 8537-15415
Sequence    

Annotation

kegg
ID cit:102615225
description nudix hydrolase 16, mitochondrial-like
nr
ID XP_006477497.1
description PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
swissprot
ID Q9LHK1
description Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1
trembl
ID A0A067DI52
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029131mg PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008442_010 0.0 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
2 Hb_013492_010 0.1811637195 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
3 Hb_000025_100 0.1876583141 - - -
4 Hb_001405_130 0.1884824154 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
5 Hb_029888_020 0.1906697382 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
6 Hb_121550_010 0.1947535315 - - conserved hypothetical protein [Ricinus communis]
7 Hb_147123_010 0.2000756103 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
8 Hb_007333_010 0.2010876802 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_012532_030 0.2029623782 - - -
10 Hb_007574_060 0.2077041275 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
11 Hb_004502_050 0.2081503971 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
12 Hb_000048_100 0.209830237 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000562_080 0.2101423547 - - conserved hypothetical protein [Ricinus communis]
14 Hb_014834_140 0.2126096255 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
15 Hb_082407_010 0.2144391962 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
16 Hb_000832_240 0.2169336699 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004586_450 0.2185676271 - - -
18 Hb_001057_050 0.2200456932 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
19 Hb_004117_180 0.2206536782 - - -
20 Hb_011174_010 0.2228414006 - - hypothetical protein JCGZ_10122 [Jatropha curcas]

Gene co-expression network

sample Hb_008442_010 Hb_008442_010 Hb_013492_010 Hb_013492_010 Hb_008442_010--Hb_013492_010 Hb_000025_100 Hb_000025_100 Hb_008442_010--Hb_000025_100 Hb_001405_130 Hb_001405_130 Hb_008442_010--Hb_001405_130 Hb_029888_020 Hb_029888_020 Hb_008442_010--Hb_029888_020 Hb_121550_010 Hb_121550_010 Hb_008442_010--Hb_121550_010 Hb_147123_010 Hb_147123_010 Hb_008442_010--Hb_147123_010 Hb_082407_010 Hb_082407_010 Hb_013492_010--Hb_082407_010 Hb_163599_010 Hb_163599_010 Hb_013492_010--Hb_163599_010 Hb_003405_060 Hb_003405_060 Hb_013492_010--Hb_003405_060 Hb_013492_010--Hb_001405_130 Hb_014834_140 Hb_014834_140 Hb_013492_010--Hb_014834_140 Hb_126112_010 Hb_126112_010 Hb_000025_100--Hb_126112_010 Hb_000025_100--Hb_121550_010 Hb_000025_100--Hb_147123_010 Hb_021888_110 Hb_021888_110 Hb_000025_100--Hb_021888_110 Hb_071923_010 Hb_071923_010 Hb_000025_100--Hb_071923_010 Hb_000562_080 Hb_000562_080 Hb_001405_130--Hb_000562_080 Hb_004048_010 Hb_004048_010 Hb_001405_130--Hb_004048_010 Hb_005199_010 Hb_005199_010 Hb_001405_130--Hb_005199_010 Hb_001405_130--Hb_003405_060 Hb_086703_010 Hb_086703_010 Hb_029888_020--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_029888_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_029888_020--Hb_003746_060 Hb_000193_350 Hb_000193_350 Hb_029888_020--Hb_000193_350 Hb_017711_010 Hb_017711_010 Hb_029888_020--Hb_017711_010 Hb_004502_080 Hb_004502_080 Hb_029888_020--Hb_004502_080 Hb_000832_240 Hb_000832_240 Hb_121550_010--Hb_000832_240 Hb_121550_010--Hb_147123_010 Hb_000122_030 Hb_000122_030 Hb_121550_010--Hb_000122_030 Hb_115919_010 Hb_115919_010 Hb_121550_010--Hb_115919_010 Hb_007545_050 Hb_007545_050 Hb_147123_010--Hb_007545_050 Hb_000048_090 Hb_000048_090 Hb_147123_010--Hb_000048_090 Hb_000265_130 Hb_000265_130 Hb_147123_010--Hb_000265_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75745 0.46835 2.05809 3.03679 1.10869 14.5777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1815 9.18552 0.210667 0.644389 0

CAGE analysis