Hb_001405_130

Information

Type -
Description -
Location Contig1405: 181390-183830
Sequence    

Annotation

kegg
ID sot:102597788
description uncharacterized LOC102597788
nr
ID XP_006344949.1
description PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID M1C3V1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10973: 181913-182241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_130 0.0 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
2 Hb_000562_080 0.1520648361 - - conserved hypothetical protein [Ricinus communis]
3 Hb_013492_010 0.1798886281 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
4 Hb_004048_010 0.188432471 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
5 Hb_008442_010 0.1884824154 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
6 Hb_005199_010 0.1887383095 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003405_060 0.1952575585 - - -
8 Hb_029982_010 0.1953241471 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
9 Hb_000048_100 0.1962566119 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029888_020 0.1969515212 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
11 Hb_014834_140 0.1970659488 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
12 Hb_007574_060 0.2011908588 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
13 Hb_003023_040 0.2127057163 - - -
14 Hb_188382_010 0.2278790807 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_004807_060 0.2283701808 - - -
16 Hb_056768_010 0.2302221661 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
17 Hb_001057_050 0.2310652972 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
18 Hb_012532_030 0.2324859476 - - -
19 Hb_000367_170 0.2354179326 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
20 Hb_082407_010 0.2364196344 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001405_130 Hb_001405_130 Hb_000562_080 Hb_000562_080 Hb_001405_130--Hb_000562_080 Hb_013492_010 Hb_013492_010 Hb_001405_130--Hb_013492_010 Hb_004048_010 Hb_004048_010 Hb_001405_130--Hb_004048_010 Hb_008442_010 Hb_008442_010 Hb_001405_130--Hb_008442_010 Hb_005199_010 Hb_005199_010 Hb_001405_130--Hb_005199_010 Hb_003405_060 Hb_003405_060 Hb_001405_130--Hb_003405_060 Hb_004502_080 Hb_004502_080 Hb_000562_080--Hb_004502_080 Hb_029888_020 Hb_029888_020 Hb_000562_080--Hb_029888_020 Hb_000048_100 Hb_000048_100 Hb_000562_080--Hb_000048_100 Hb_188382_010 Hb_188382_010 Hb_000562_080--Hb_188382_010 Hb_008557_020 Hb_008557_020 Hb_000562_080--Hb_008557_020 Hb_082407_010 Hb_082407_010 Hb_013492_010--Hb_082407_010 Hb_163599_010 Hb_163599_010 Hb_013492_010--Hb_163599_010 Hb_013492_010--Hb_003405_060 Hb_013492_010--Hb_008442_010 Hb_014834_140 Hb_014834_140 Hb_013492_010--Hb_014834_140 Hb_029982_010 Hb_029982_010 Hb_004048_010--Hb_029982_010 Hb_000134_020 Hb_000134_020 Hb_004048_010--Hb_000134_020 Hb_003638_080 Hb_003638_080 Hb_004048_010--Hb_003638_080 Hb_004048_010--Hb_005199_010 Hb_004048_010--Hb_029888_020 Hb_000025_100 Hb_000025_100 Hb_008442_010--Hb_000025_100 Hb_008442_010--Hb_029888_020 Hb_121550_010 Hb_121550_010 Hb_008442_010--Hb_121550_010 Hb_147123_010 Hb_147123_010 Hb_008442_010--Hb_147123_010 Hb_109578_010 Hb_109578_010 Hb_005199_010--Hb_109578_010 Hb_000275_010 Hb_000275_010 Hb_005199_010--Hb_000275_010 Hb_000345_430 Hb_000345_430 Hb_005199_010--Hb_000345_430 Hb_007765_120 Hb_007765_120 Hb_005199_010--Hb_007765_120 Hb_003405_060--Hb_014834_140 Hb_086703_010 Hb_086703_010 Hb_003405_060--Hb_086703_010 Hb_004502_020 Hb_004502_020 Hb_003405_060--Hb_004502_020 Hb_000155_180 Hb_000155_180 Hb_003405_060--Hb_000155_180 Hb_003405_060--Hb_029888_020 Hb_004807_060 Hb_004807_060 Hb_003405_060--Hb_004807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45679 0.425862 0.885273 3.32303 2.98563 10.8335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7376 15.5822 0 0.123369 0

CAGE analysis