Hb_188382_010

Information

Type -
Description -
Location Contig188382: 1-5581
Sequence    

Annotation

kegg
ID rcu:RCOM_0136880
description Ran GTPase binding protein, putative
nr
ID XP_002526126.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q17TI5
description Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2
trembl
ID B9SJF7
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0136880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188382_010 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_015675_060 0.1705853314 - - -
3 Hb_039548_010 0.1706688259 - - hypothetical protein RCOM_1685970 [Ricinus communis]
4 Hb_030765_010 0.1803118063 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
5 Hb_002742_010 0.1832416977 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
6 Hb_029982_010 0.1851006334 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
7 Hb_000562_080 0.1854544663 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001141_400 0.196604501 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
9 Hb_162999_010 0.1987656952 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_000048_100 0.1996681171 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000329_530 0.2009484177 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
12 Hb_004116_110 0.2083816276 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
13 Hb_000086_330 0.2217077917 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
14 Hb_004502_080 0.2241851971 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
15 Hb_000048_090 0.2274485614 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
16 Hb_001405_130 0.2278790807 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
17 Hb_001279_250 0.2361328434 - - PREDICTED: pectate lyase-like [Jatropha curcas]
18 Hb_008557_020 0.2368653364 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
19 Hb_005946_030 0.2372853085 - - ATP-binding cassette transporter, putative [Ricinus communis]
20 Hb_056768_010 0.2378471142 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]

Gene co-expression network

sample Hb_188382_010 Hb_188382_010 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_002742_010 Hb_002742_010 Hb_188382_010--Hb_002742_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_004116_110 Hb_004116_110 Hb_015675_060--Hb_004116_110 Hb_142522_010 Hb_142522_010 Hb_015675_060--Hb_142522_010 Hb_015675_060--Hb_029982_010 Hb_015675_060--Hb_002742_010 Hb_004691_040 Hb_004691_040 Hb_015675_060--Hb_004691_040 Hb_005946_030 Hb_005946_030 Hb_039548_010--Hb_005946_030 Hb_017436_010 Hb_017436_010 Hb_039548_010--Hb_017436_010 Hb_039305_010 Hb_039305_010 Hb_039548_010--Hb_039305_010 Hb_004958_030 Hb_004958_030 Hb_039548_010--Hb_004958_030 Hb_159085_010 Hb_159085_010 Hb_039548_010--Hb_159085_010 Hb_000048_100 Hb_000048_100 Hb_030765_010--Hb_000048_100 Hb_001186_050 Hb_001186_050 Hb_030765_010--Hb_001186_050 Hb_000086_330 Hb_000086_330 Hb_030765_010--Hb_000086_330 Hb_000348_040 Hb_000348_040 Hb_030765_010--Hb_000348_040 Hb_000736_010 Hb_000736_010 Hb_030765_010--Hb_000736_010 Hb_001141_400 Hb_001141_400 Hb_002742_010--Hb_001141_400 Hb_000329_530 Hb_000329_530 Hb_002742_010--Hb_000329_530 Hb_000373_300 Hb_000373_300 Hb_002742_010--Hb_000373_300 Hb_028365_010 Hb_028365_010 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050 Hb_086859_010 Hb_086859_010 Hb_029982_010--Hb_086859_010 Hb_042404_010 Hb_042404_010 Hb_029982_010--Hb_042404_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_029982_010--Hb_001405_130 Hb_029982_010--Hb_142522_010 Hb_000562_080--Hb_001405_130 Hb_004502_080 Hb_004502_080 Hb_000562_080--Hb_004502_080 Hb_029888_020 Hb_029888_020 Hb_000562_080--Hb_029888_020 Hb_000562_080--Hb_000048_100 Hb_008557_020 Hb_008557_020 Hb_000562_080--Hb_008557_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235429 0 0 0.0205753 0.312089 0.612376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.971456 0.806454 0 0 0

CAGE analysis