Hb_042404_010

Information

Type transcription factor
Description TF Family: GeBP
Location Contig42404: 9-1004
Sequence    

Annotation

kegg
ID rcu:RCOM_0906550
description transcription regulator, putative
nr
ID XP_012077335.1
description PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
swissprot
ID Q9SB42
description Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210 PE=1 SV=1
trembl
ID A0A067LAY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042404_010 0.0 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
2 Hb_000445_330 0.1658782949 - - conserved hypothetical protein [Ricinus communis]
3 Hb_029982_010 0.1714677195 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
4 Hb_136765_010 0.1887762753 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
5 Hb_086859_010 0.1954173926 - - -
6 Hb_000331_500 0.1980012996 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_070820_010 0.2033172354 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
8 Hb_002141_020 0.2082942969 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
9 Hb_004712_180 0.2091225149 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000086_330 0.216329445 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
11 Hb_002821_010 0.2167663344 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
12 Hb_002863_010 0.2191570879 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
13 Hb_002045_140 0.2233762817 - - histone acetyltransferase, partial [Triticum aestivum]
14 Hb_004204_090 0.2238430879 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
15 Hb_008667_040 0.2268151037 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
16 Hb_000331_310 0.2278992011 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
17 Hb_027472_090 0.2279003267 - - -
18 Hb_000221_100 0.228805641 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
19 Hb_004098_030 0.2290429782 - - TMV resistance protein N, putative [Ricinus communis]
20 Hb_000046_020 0.2294705766 - - -

Gene co-expression network

sample Hb_042404_010 Hb_042404_010 Hb_000445_330 Hb_000445_330 Hb_042404_010--Hb_000445_330 Hb_029982_010 Hb_029982_010 Hb_042404_010--Hb_029982_010 Hb_136765_010 Hb_136765_010 Hb_042404_010--Hb_136765_010 Hb_086859_010 Hb_086859_010 Hb_042404_010--Hb_086859_010 Hb_000331_500 Hb_000331_500 Hb_042404_010--Hb_000331_500 Hb_070820_010 Hb_070820_010 Hb_042404_010--Hb_070820_010 Hb_000086_330 Hb_000086_330 Hb_000445_330--Hb_000086_330 Hb_019033_010 Hb_019033_010 Hb_000445_330--Hb_019033_010 Hb_010128_110 Hb_010128_110 Hb_000445_330--Hb_010128_110 Hb_004502_080 Hb_004502_080 Hb_000445_330--Hb_004502_080 Hb_068804_150 Hb_068804_150 Hb_000445_330--Hb_068804_150 Hb_029982_010--Hb_086859_010 Hb_188382_010 Hb_188382_010 Hb_029982_010--Hb_188382_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_029982_010--Hb_001405_130 Hb_142522_010 Hb_142522_010 Hb_029982_010--Hb_142522_010 Hb_136765_010--Hb_000331_500 Hb_068922_010 Hb_068922_010 Hb_136765_010--Hb_068922_010 Hb_002141_020 Hb_002141_020 Hb_136765_010--Hb_002141_020 Hb_012867_010 Hb_012867_010 Hb_136765_010--Hb_012867_010 Hb_010068_100 Hb_010068_100 Hb_136765_010--Hb_010068_100 Hb_004241_040 Hb_004241_040 Hb_136765_010--Hb_004241_040 Hb_011161_070 Hb_011161_070 Hb_086859_010--Hb_011161_070 Hb_086859_010--Hb_142522_010 Hb_000221_100 Hb_000221_100 Hb_086859_010--Hb_000221_100 Hb_000329_530 Hb_000329_530 Hb_086859_010--Hb_000329_530 Hb_000331_500--Hb_002141_020 Hb_000107_140 Hb_000107_140 Hb_000331_500--Hb_000107_140 Hb_003376_170 Hb_003376_170 Hb_000331_500--Hb_003376_170 Hb_004662_010 Hb_004662_010 Hb_000331_500--Hb_004662_010 Hb_070820_010--Hb_000086_330 Hb_002821_010 Hb_002821_010 Hb_070820_010--Hb_002821_010 Hb_004098_030 Hb_004098_030 Hb_070820_010--Hb_004098_030 Hb_003398_060 Hb_003398_060 Hb_070820_010--Hb_003398_060 Hb_048197_010 Hb_048197_010 Hb_070820_010--Hb_048197_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.83171 4.19568 0.96306 2.75829 7.218 11.5407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0321 10.2717 0 0 0

CAGE analysis