Hb_142522_010

Information

Type -
Description -
Location Contig142522: 9107-10177
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142522_010 0.0 - - -
2 Hb_086859_010 0.1754679713 - - -
3 Hb_008078_030 0.1894271685 - - -
4 Hb_029982_010 0.1968524978 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
5 Hb_001021_230 0.1975724664 - - -
6 Hb_015675_060 0.200307957 - - -
7 Hb_004502_080 0.2010342533 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
8 Hb_044662_040 0.2043912152 - - -
9 Hb_012395_100 0.2045081182 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
10 Hb_178345_010 0.2078657745 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
11 Hb_011161_070 0.2103743335 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]
12 Hb_002863_010 0.2117044836 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
13 Hb_000175_040 0.2129421974 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
14 Hb_004607_120 0.2175934743 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
15 Hb_003057_050 0.2185038714 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
16 Hb_000977_140 0.2199577462 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
17 Hb_001821_120 0.2218857933 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
18 Hb_000270_360 0.2219585077 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
19 Hb_170305_020 0.2228821816 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
20 Hb_004545_160 0.2235773669 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_142522_010 Hb_142522_010 Hb_086859_010 Hb_086859_010 Hb_142522_010--Hb_086859_010 Hb_008078_030 Hb_008078_030 Hb_142522_010--Hb_008078_030 Hb_029982_010 Hb_029982_010 Hb_142522_010--Hb_029982_010 Hb_001021_230 Hb_001021_230 Hb_142522_010--Hb_001021_230 Hb_015675_060 Hb_015675_060 Hb_142522_010--Hb_015675_060 Hb_004502_080 Hb_004502_080 Hb_142522_010--Hb_004502_080 Hb_086859_010--Hb_029982_010 Hb_011161_070 Hb_011161_070 Hb_086859_010--Hb_011161_070 Hb_042404_010 Hb_042404_010 Hb_086859_010--Hb_042404_010 Hb_000221_100 Hb_000221_100 Hb_086859_010--Hb_000221_100 Hb_000329_530 Hb_000329_530 Hb_086859_010--Hb_000329_530 Hb_008078_030--Hb_011161_070 Hb_003029_080 Hb_003029_080 Hb_008078_030--Hb_003029_080 Hb_001811_040 Hb_001811_040 Hb_008078_030--Hb_001811_040 Hb_145761_010 Hb_145761_010 Hb_008078_030--Hb_145761_010 Hb_008078_030--Hb_000221_100 Hb_029982_010--Hb_042404_010 Hb_188382_010 Hb_188382_010 Hb_029982_010--Hb_188382_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_029982_010--Hb_001405_130 Hb_008578_010 Hb_008578_010 Hb_001021_230--Hb_008578_010 Hb_000621_060 Hb_000621_060 Hb_001021_230--Hb_000621_060 Hb_000065_080 Hb_000065_080 Hb_001021_230--Hb_000065_080 Hb_003544_090 Hb_003544_090 Hb_001021_230--Hb_003544_090 Hb_007632_250 Hb_007632_250 Hb_001021_230--Hb_007632_250 Hb_000270_360 Hb_000270_360 Hb_001021_230--Hb_000270_360 Hb_004116_110 Hb_004116_110 Hb_015675_060--Hb_004116_110 Hb_015675_060--Hb_188382_010 Hb_015675_060--Hb_029982_010 Hb_002742_010 Hb_002742_010 Hb_015675_060--Hb_002742_010 Hb_004691_040 Hb_004691_040 Hb_015675_060--Hb_004691_040 Hb_000175_040 Hb_000175_040 Hb_004502_080--Hb_000175_040 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_019033_010 Hb_019033_010 Hb_004502_080--Hb_019033_010 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.605592 0.0868285 0.150371 0 0.987839 0.969896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29177 1.18432 0 0.104353 0.162553

CAGE analysis