Hb_000329_530

Information

Type -
Description -
Location Contig329: 394985-400646
Sequence    

Annotation

kegg
ID tcc:TCM_038736
description hypothetical protein
nr
ID XP_007014066.1
description Uncharacterized protein TCM_038736 [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061GPE8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_038736 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_530 0.0 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
2 Hb_001741_050 0.1556163681 - - -
3 Hb_002742_010 0.1826217276 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
4 Hb_004449_010 0.1844865293 - - lipase [Ricinus communis]
5 Hb_002188_100 0.1917429922 - - conserved hypothetical protein [Ricinus communis]
6 Hb_188382_010 0.2009484177 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_162999_010 0.2023899721 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_004025_030 0.2044581375 - - -
9 Hb_086859_010 0.205716791 - - -
10 Hb_000340_480 0.2078155452 - - -
11 Hb_029982_010 0.2166843292 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
12 Hb_178345_010 0.2203554463 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
13 Hb_006557_010 0.2222732986 - - -
14 Hb_004375_060 0.2235069202 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
15 Hb_012395_100 0.2246554071 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
16 Hb_000612_070 0.2261344617 - - conserved hypothetical protein [Ricinus communis]
17 Hb_142522_010 0.2294934928 - - -
18 Hb_077562_040 0.2317261223 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
19 Hb_023675_010 0.2341371521 - - -
20 Hb_004657_010 0.2349174746 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_530 Hb_000329_530 Hb_001741_050 Hb_001741_050 Hb_000329_530--Hb_001741_050 Hb_002742_010 Hb_002742_010 Hb_000329_530--Hb_002742_010 Hb_004449_010 Hb_004449_010 Hb_000329_530--Hb_004449_010 Hb_002188_100 Hb_002188_100 Hb_000329_530--Hb_002188_100 Hb_188382_010 Hb_188382_010 Hb_000329_530--Hb_188382_010 Hb_162999_010 Hb_162999_010 Hb_000329_530--Hb_162999_010 Hb_001195_590 Hb_001195_590 Hb_001741_050--Hb_001195_590 Hb_178345_010 Hb_178345_010 Hb_001741_050--Hb_178345_010 Hb_001741_050--Hb_004449_010 Hb_012395_100 Hb_012395_100 Hb_001741_050--Hb_012395_100 Hb_000046_020 Hb_000046_020 Hb_001741_050--Hb_000046_020 Hb_001141_400 Hb_001141_400 Hb_002742_010--Hb_001141_400 Hb_002742_010--Hb_188382_010 Hb_000373_300 Hb_000373_300 Hb_002742_010--Hb_000373_300 Hb_028365_010 Hb_028365_010 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050 Hb_004657_010 Hb_004657_010 Hb_004449_010--Hb_004657_010 Hb_004449_010--Hb_178345_010 Hb_000340_480 Hb_000340_480 Hb_004449_010--Hb_000340_480 Hb_000977_140 Hb_000977_140 Hb_004449_010--Hb_000977_140 Hb_006557_010 Hb_006557_010 Hb_004449_010--Hb_006557_010 Hb_004449_010--Hb_012395_100 Hb_000463_050 Hb_000463_050 Hb_002188_100--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_002188_100--Hb_024505_030 Hb_002153_010 Hb_002153_010 Hb_002188_100--Hb_002153_010 Hb_001922_040 Hb_001922_040 Hb_002188_100--Hb_001922_040 Hb_002188_100--Hb_162999_010 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_000048_090 Hb_000048_090 Hb_162999_010--Hb_000048_090 Hb_162999_010--Hb_002153_010 Hb_126398_010 Hb_126398_010 Hb_162999_010--Hb_126398_010 Hb_001488_110 Hb_001488_110 Hb_162999_010--Hb_001488_110 Hb_174107_010 Hb_174107_010 Hb_162999_010--Hb_174107_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0245865 0 0 0 0.0505566 0.0460315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0473276 0.0372447 0 0 0

CAGE analysis