Hb_024505_030

Information

Type -
Description -
Location Contig24505: 20402-22229
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02250g
description POPTRDRAFT_835828; aspartate aminotransferase 2 family protein
nr
ID XP_012076464.1
description PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
swissprot
ID P26563
description Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1
trembl
ID A0A067KBD5
description Aspartate aminotransferase OS=Jatropha curcas GN=JCGZ_07112 PE=3 SV=1
Gene Ontology
ID GO:0008483
description aspartate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024505_030 0.0 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
2 Hb_000463_050 0.1088464988 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
3 Hb_001922_040 0.1783547968 - - reticulon family protein [Populus trichocarpa]
4 Hb_002188_100 0.1820132524 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000612_070 0.2245960598 - - conserved hypothetical protein [Ricinus communis]
6 Hb_064201_010 0.2368772763 - - hypothetical protein RCOM_1685970 [Ricinus communis]
7 Hb_000454_030 0.2395466021 - - -
8 Hb_003376_170 0.2403637901 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
9 Hb_002081_100 0.2423641874 - - -
10 Hb_001675_060 0.2482311987 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
11 Hb_001668_030 0.251498252 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002639_070 0.253837703 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
13 Hb_179763_010 0.2539207177 - - -
14 Hb_001427_180 0.2568218407 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
15 Hb_000340_480 0.2638477489 - - -
16 Hb_001513_020 0.2648889627 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
17 Hb_004375_060 0.2702283348 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
18 Hb_000061_410 0.2769211749 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
19 Hb_000352_130 0.2773162247 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
20 Hb_000038_150 0.279262813 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_024505_030 Hb_024505_030 Hb_000463_050 Hb_000463_050 Hb_024505_030--Hb_000463_050 Hb_001922_040 Hb_001922_040 Hb_024505_030--Hb_001922_040 Hb_002188_100 Hb_002188_100 Hb_024505_030--Hb_002188_100 Hb_000612_070 Hb_000612_070 Hb_024505_030--Hb_000612_070 Hb_064201_010 Hb_064201_010 Hb_024505_030--Hb_064201_010 Hb_000454_030 Hb_000454_030 Hb_024505_030--Hb_000454_030 Hb_000463_050--Hb_002188_100 Hb_000463_050--Hb_001922_040 Hb_002081_100 Hb_002081_100 Hb_000463_050--Hb_002081_100 Hb_000463_050--Hb_000612_070 Hb_004375_060 Hb_004375_060 Hb_000463_050--Hb_004375_060 Hb_001922_040--Hb_000612_070 Hb_001922_040--Hb_002188_100 Hb_001712_050 Hb_001712_050 Hb_001922_040--Hb_001712_050 Hb_000340_480 Hb_000340_480 Hb_001922_040--Hb_000340_480 Hb_002153_010 Hb_002153_010 Hb_002188_100--Hb_002153_010 Hb_000329_530 Hb_000329_530 Hb_002188_100--Hb_000329_530 Hb_162999_010 Hb_162999_010 Hb_002188_100--Hb_162999_010 Hb_000612_070--Hb_000340_480 Hb_000612_070--Hb_004375_060 Hb_000612_070--Hb_002081_100 Hb_004025_030 Hb_004025_030 Hb_000612_070--Hb_004025_030 Hb_003507_040 Hb_003507_040 Hb_000612_070--Hb_003507_040 Hb_001146_070 Hb_001146_070 Hb_064201_010--Hb_001146_070 Hb_005271_030 Hb_005271_030 Hb_064201_010--Hb_005271_030 Hb_000329_620 Hb_000329_620 Hb_064201_010--Hb_000329_620 Hb_003376_170 Hb_003376_170 Hb_064201_010--Hb_003376_170 Hb_000352_130 Hb_000352_130 Hb_064201_010--Hb_000352_130 Hb_000061_410 Hb_000061_410 Hb_064201_010--Hb_000061_410 Hb_000175_530 Hb_000175_530 Hb_000454_030--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_000454_030--Hb_000580_060 Hb_000441_230 Hb_000441_230 Hb_000454_030--Hb_000441_230 Hb_000454_030--Hb_001146_070 Hb_000329_540 Hb_000329_540 Hb_000454_030--Hb_000329_540 Hb_003226_170 Hb_003226_170 Hb_000454_030--Hb_003226_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.337422 0 0.0809967 0 1.38694 1.60456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241967 0.380236 0 0 0

CAGE analysis