Hb_001712_050

Information

Type -
Description -
Location Contig1712: 53665-54042
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11070g
description POPTRDRAFT_765976; hypothetical protein
nr
ID XP_012081991.1
description PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HIU3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s11070g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001712_050 0.0 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
2 Hb_001513_020 0.1656792446 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
3 Hb_005305_060 0.1868625417 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
4 Hb_002639_070 0.1910223124 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
5 Hb_001922_040 0.1950639926 - - reticulon family protein [Populus trichocarpa]
6 Hb_071923_010 0.2117543875 - - -
7 Hb_000612_070 0.2152799956 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001722_020 0.2175126155 - - -
9 Hb_144898_010 0.2272827681 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
10 Hb_001427_180 0.2347654281 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
11 Hb_007124_010 0.2438384464 - - unnamed protein product [Coffea canephora]
12 Hb_027445_060 0.245008301 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
13 Hb_004502_050 0.2488268643 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
14 Hb_000122_030 0.2514490903 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
15 Hb_005054_070 0.2537974981 - - unnamed protein product [Vitis vinifera]
16 Hb_001675_060 0.2545711402 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
17 Hb_000107_140 0.2565969518 - - -
18 Hb_088774_010 0.2569209593 - - -
19 Hb_000200_040 0.2578290566 - - -
20 Hb_028639_050 0.2581307694 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]

Gene co-expression network

sample Hb_001712_050 Hb_001712_050 Hb_001513_020 Hb_001513_020 Hb_001712_050--Hb_001513_020 Hb_005305_060 Hb_005305_060 Hb_001712_050--Hb_005305_060 Hb_002639_070 Hb_002639_070 Hb_001712_050--Hb_002639_070 Hb_001922_040 Hb_001922_040 Hb_001712_050--Hb_001922_040 Hb_071923_010 Hb_071923_010 Hb_001712_050--Hb_071923_010 Hb_000612_070 Hb_000612_070 Hb_001712_050--Hb_000612_070 Hb_001477_010 Hb_001477_010 Hb_001513_020--Hb_001477_010 Hb_001675_060 Hb_001675_060 Hb_001513_020--Hb_001675_060 Hb_005016_150 Hb_005016_150 Hb_001513_020--Hb_005016_150 Hb_000256_270 Hb_000256_270 Hb_001513_020--Hb_000256_270 Hb_001668_030 Hb_001668_030 Hb_001513_020--Hb_001668_030 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_027445_060 Hb_027445_060 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_115919_010 Hb_115919_010 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_002639_070--Hb_144898_010 Hb_000107_140 Hb_000107_140 Hb_002639_070--Hb_000107_140 Hb_002639_070--Hb_001513_020 Hb_005511_060 Hb_005511_060 Hb_002639_070--Hb_005511_060 Hb_002639_070--Hb_005305_060 Hb_001922_040--Hb_000612_070 Hb_000463_050 Hb_000463_050 Hb_001922_040--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_001922_040--Hb_024505_030 Hb_002188_100 Hb_002188_100 Hb_001922_040--Hb_002188_100 Hb_000340_480 Hb_000340_480 Hb_001922_040--Hb_000340_480 Hb_071923_010--Hb_001722_020 Hb_002249_110 Hb_002249_110 Hb_071923_010--Hb_002249_110 Hb_088774_010 Hb_088774_010 Hb_071923_010--Hb_088774_010 Hb_071923_010--Hb_144898_010 Hb_000295_090 Hb_000295_090 Hb_071923_010--Hb_000295_090 Hb_003297_020 Hb_003297_020 Hb_071923_010--Hb_003297_020 Hb_000612_070--Hb_000340_480 Hb_004375_060 Hb_004375_060 Hb_000612_070--Hb_004375_060 Hb_002081_100 Hb_002081_100 Hb_000612_070--Hb_002081_100 Hb_004025_030 Hb_004025_030 Hb_000612_070--Hb_004025_030 Hb_003507_040 Hb_003507_040 Hb_000612_070--Hb_003507_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.99678 0.651096 1.94993 2.80051 21.7313 52.6471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4763 8.04805 2.19884 1.89735 0

CAGE analysis