Hb_005511_060

Information

Type -
Description -
Location Contig5511: 47749-49265
Sequence    

Annotation

kegg
ID rcu:RCOM_0271200
description hypothetical protein
nr
ID XP_002534549.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C7C1
description Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1
trembl
ID B9T8I0
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0271200 PE=4 SV=1
Gene Ontology
ID GO:0016021
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48268: 47587-49986
cDNA
(Sanger)
(ID:Location)		 001_O19.ab1: 47599-49099 , 010_G24.ab1: 47599-48983 , 011_C03.ab1: 47597-48991 , 041_P23.ab1: 47597-48073

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000696_350 0.138309789 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
3 Hb_025814_010 0.1548662059 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
4 Hb_000045_070 0.1637077913 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000295_100 0.1744038574 - - -
6 Hb_095831_010 0.1782473758 - - PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
7 Hb_083043_010 0.1804057002 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
8 Hb_001546_050 0.1809345258 - - -
9 Hb_002508_010 0.1819914417 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
10 Hb_007012_020 0.182784129 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
11 Hb_000307_200 0.1845807796 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
12 Hb_003683_180 0.186245863 - - conserved hypothetical protein [Ricinus communis]
13 Hb_150204_010 0.1892766081 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
14 Hb_002811_120 0.1893552845 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
15 Hb_000424_240 0.1914674313 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
16 Hb_116596_010 0.1922164059 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
17 Hb_003711_040 0.1940407902 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
18 Hb_002235_150 0.1944869797 - - -
19 Hb_000384_090 0.1951105601 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
20 Hb_001767_120 0.1959958131 - - -

Gene co-expression network

sample Hb_005511_060 Hb_005511_060 Hb_000696_350 Hb_000696_350 Hb_005511_060--Hb_000696_350 Hb_025814_010 Hb_025814_010 Hb_005511_060--Hb_025814_010 Hb_000045_070 Hb_000045_070 Hb_005511_060--Hb_000045_070 Hb_000295_100 Hb_000295_100 Hb_005511_060--Hb_000295_100 Hb_095831_010 Hb_095831_010 Hb_005511_060--Hb_095831_010 Hb_083043_010 Hb_083043_010 Hb_005511_060--Hb_083043_010 Hb_008511_050 Hb_008511_050 Hb_000696_350--Hb_008511_050 Hb_000679_150 Hb_000679_150 Hb_000696_350--Hb_000679_150 Hb_006455_110 Hb_006455_110 Hb_000696_350--Hb_006455_110 Hb_012286_050 Hb_012286_050 Hb_000696_350--Hb_012286_050 Hb_006455_090 Hb_006455_090 Hb_000696_350--Hb_006455_090 Hb_000696_350--Hb_025814_010 Hb_000307_200 Hb_000307_200 Hb_025814_010--Hb_000307_200 Hb_025814_010--Hb_000045_070 Hb_150204_010 Hb_150204_010 Hb_025814_010--Hb_150204_010 Hb_007192_080 Hb_007192_080 Hb_025814_010--Hb_007192_080 Hb_003195_060 Hb_003195_060 Hb_025814_010--Hb_003195_060 Hb_000045_070--Hb_000307_200 Hb_009543_030 Hb_009543_030 Hb_000045_070--Hb_009543_030 Hb_028900_020 Hb_028900_020 Hb_000045_070--Hb_028900_020 Hb_005735_030 Hb_005735_030 Hb_000045_070--Hb_005735_030 Hb_001902_050 Hb_001902_050 Hb_000045_070--Hb_001902_050 Hb_000295_100--Hb_006455_110 Hb_006455_080 Hb_006455_080 Hb_000295_100--Hb_006455_080 Hb_000295_100--Hb_006455_090 Hb_002960_050 Hb_002960_050 Hb_000295_100--Hb_002960_050 Hb_012807_080 Hb_012807_080 Hb_000295_100--Hb_012807_080 Hb_005965_010 Hb_005965_010 Hb_000295_100--Hb_005965_010 Hb_002687_040 Hb_002687_040 Hb_095831_010--Hb_002687_040 Hb_002508_010 Hb_002508_010 Hb_095831_010--Hb_002508_010 Hb_001247_170 Hb_001247_170 Hb_095831_010--Hb_001247_170 Hb_095831_010--Hb_000696_350 Hb_003683_180 Hb_003683_180 Hb_095831_010--Hb_003683_180 Hb_003711_040 Hb_003711_040 Hb_083043_010--Hb_003711_040 Hb_003581_020 Hb_003581_020 Hb_083043_010--Hb_003581_020 Hb_002811_120 Hb_002811_120 Hb_083043_010--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_083043_010--Hb_150204_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.876 7.99286 2.83015 46.476 85.9693 126.736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9623 32.414 23.9958 12.8816 12.4284

CAGE analysis