Hb_095831_010

Information

Type -
Description -
Location Contig95831: 1061-2307
Sequence    

Annotation

kegg
ID bvg:104884649
description uncharacterized LOC104884649
nr
ID XP_010667636.1
description PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID O81506
description Putative retrotransposon protein OS=Arabidopsis thaliana GN=T7M24.7 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095831_010 0.0 - - PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
2 Hb_002687_040 0.1677989289 - - PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
3 Hb_002508_010 0.1771173301 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
4 Hb_005511_060 0.1782473758 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001247_170 0.1797385962 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
6 Hb_000696_350 0.1878137078 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
7 Hb_003683_180 0.1996082047 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001767_120 0.2004201087 - - -
9 Hb_025814_010 0.2045485337 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
10 Hb_168973_010 0.2063885449 - - -
11 Hb_002235_120 0.2127671676 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
12 Hb_005928_080 0.2132107947 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
13 Hb_015026_060 0.2132798775 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
14 Hb_083043_010 0.2136488971 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_005271_080 0.2142444139 - - receptor kinase, putative [Ricinus communis]
16 Hb_001752_040 0.2177505092 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
17 Hb_000915_110 0.2188842538 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
18 Hb_004846_040 0.2201978401 transcription factor TF Family: HMG -
19 Hb_005368_010 0.2208252042 - - PREDICTED: umecyanin-like [Jatropha curcas]
20 Hb_000189_510 0.2218953704 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]

Gene co-expression network

sample Hb_095831_010 Hb_095831_010 Hb_002687_040 Hb_002687_040 Hb_095831_010--Hb_002687_040 Hb_002508_010 Hb_002508_010 Hb_095831_010--Hb_002508_010 Hb_005511_060 Hb_005511_060 Hb_095831_010--Hb_005511_060 Hb_001247_170 Hb_001247_170 Hb_095831_010--Hb_001247_170 Hb_000696_350 Hb_000696_350 Hb_095831_010--Hb_000696_350 Hb_003683_180 Hb_003683_180 Hb_095831_010--Hb_003683_180 Hb_002687_040--Hb_003683_180 Hb_002687_040--Hb_001247_170 Hb_015026_060 Hb_015026_060 Hb_002687_040--Hb_015026_060 Hb_005147_060 Hb_005147_060 Hb_002687_040--Hb_005147_060 Hb_025814_010 Hb_025814_010 Hb_002687_040--Hb_025814_010 Hb_116596_010 Hb_116596_010 Hb_002508_010--Hb_116596_010 Hb_041392_010 Hb_041392_010 Hb_002508_010--Hb_041392_010 Hb_106411_010 Hb_106411_010 Hb_002508_010--Hb_106411_010 Hb_001767_120 Hb_001767_120 Hb_002508_010--Hb_001767_120 Hb_150204_010 Hb_150204_010 Hb_002508_010--Hb_150204_010 Hb_000025_050 Hb_000025_050 Hb_002508_010--Hb_000025_050 Hb_005511_060--Hb_000696_350 Hb_005511_060--Hb_025814_010 Hb_000045_070 Hb_000045_070 Hb_005511_060--Hb_000045_070 Hb_000295_100 Hb_000295_100 Hb_005511_060--Hb_000295_100 Hb_083043_010 Hb_083043_010 Hb_005511_060--Hb_083043_010 Hb_001584_370 Hb_001584_370 Hb_001247_170--Hb_001584_370 Hb_014361_100 Hb_014361_100 Hb_001247_170--Hb_014361_100 Hb_005271_080 Hb_005271_080 Hb_001247_170--Hb_005271_080 Hb_000042_270 Hb_000042_270 Hb_001247_170--Hb_000042_270 Hb_000497_230 Hb_000497_230 Hb_001247_170--Hb_000497_230 Hb_008511_050 Hb_008511_050 Hb_000696_350--Hb_008511_050 Hb_000679_150 Hb_000679_150 Hb_000696_350--Hb_000679_150 Hb_006455_110 Hb_006455_110 Hb_000696_350--Hb_006455_110 Hb_012286_050 Hb_012286_050 Hb_000696_350--Hb_012286_050 Hb_006455_090 Hb_006455_090 Hb_000696_350--Hb_006455_090 Hb_000696_350--Hb_025814_010 Hb_003683_180--Hb_005147_060 Hb_141132_010 Hb_141132_010 Hb_003683_180--Hb_141132_010 Hb_008103_040 Hb_008103_040 Hb_003683_180--Hb_008103_040 Hb_004732_020 Hb_004732_020 Hb_003683_180--Hb_004732_020 Hb_009119_040 Hb_009119_040 Hb_003683_180--Hb_009119_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.412316 0.0776813 0.47678 0.884703 1.59464 2.45074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174104 0.410251 0.670586 0.173624 0.245918

CAGE analysis