Hb_001247_170

Information

Type -
Description -
Location Contig1247: 105109-110052
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00520g
description kinase family protein
nr
ID XP_012088837.1
description PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
swissprot
ID Q9SJG2
description Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=3 SV=1
trembl
ID A0A067JKK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23176 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at5g18500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07488: 105201-109684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_170 0.0 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
2 Hb_002687_040 0.1354218699 - - PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
3 Hb_001584_370 0.147771523 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
4 Hb_014361_100 0.1480351019 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
5 Hb_005271_080 0.1515756679 - - receptor kinase, putative [Ricinus communis]
6 Hb_000042_270 0.1520726022 - - myosin vIII, putative [Ricinus communis]
7 Hb_000497_230 0.1588030211 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
8 Hb_000392_370 0.1602341125 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
9 Hb_174541_020 0.1631218857 - - PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]
10 Hb_000915_110 0.1641298057 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
11 Hb_000243_320 0.1655513235 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000705_120 0.1666845977 - - glycosyltransferase, putative [Ricinus communis]
13 Hb_000883_130 0.166913889 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
14 Hb_007943_100 0.1687801976 - - unnamed protein product [Coffea canephora]
15 Hb_000197_210 0.1692977103 - - phosphatidylinositol transporter, putative [Ricinus communis]
16 Hb_002750_050 0.1695203346 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
17 Hb_001348_050 0.1716440146 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000207_190 0.171884228 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
19 Hb_000592_080 0.1739724554 - - PREDICTED: thymidylate kinase [Jatropha curcas]
20 Hb_005928_080 0.1743059047 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_170 Hb_001247_170 Hb_002687_040 Hb_002687_040 Hb_001247_170--Hb_002687_040 Hb_001584_370 Hb_001584_370 Hb_001247_170--Hb_001584_370 Hb_014361_100 Hb_014361_100 Hb_001247_170--Hb_014361_100 Hb_005271_080 Hb_005271_080 Hb_001247_170--Hb_005271_080 Hb_000042_270 Hb_000042_270 Hb_001247_170--Hb_000042_270 Hb_000497_230 Hb_000497_230 Hb_001247_170--Hb_000497_230 Hb_003683_180 Hb_003683_180 Hb_002687_040--Hb_003683_180 Hb_095831_010 Hb_095831_010 Hb_002687_040--Hb_095831_010 Hb_015026_060 Hb_015026_060 Hb_002687_040--Hb_015026_060 Hb_005147_060 Hb_005147_060 Hb_002687_040--Hb_005147_060 Hb_025814_010 Hb_025814_010 Hb_002687_040--Hb_025814_010 Hb_000392_370 Hb_000392_370 Hb_001584_370--Hb_000392_370 Hb_000021_040 Hb_000021_040 Hb_001584_370--Hb_000021_040 Hb_000002_490 Hb_000002_490 Hb_001584_370--Hb_000002_490 Hb_002249_120 Hb_002249_120 Hb_001584_370--Hb_002249_120 Hb_007426_150 Hb_007426_150 Hb_001584_370--Hb_007426_150 Hb_000933_020 Hb_000933_020 Hb_001584_370--Hb_000933_020 Hb_000329_390 Hb_000329_390 Hb_014361_100--Hb_000329_390 Hb_001348_050 Hb_001348_050 Hb_014361_100--Hb_001348_050 Hb_000236_380 Hb_000236_380 Hb_014361_100--Hb_000236_380 Hb_001584_290 Hb_001584_290 Hb_014361_100--Hb_001584_290 Hb_000322_090 Hb_000322_090 Hb_014361_100--Hb_000322_090 Hb_014361_100--Hb_000042_270 Hb_001279_330 Hb_001279_330 Hb_005271_080--Hb_001279_330 Hb_005368_010 Hb_005368_010 Hb_005271_080--Hb_005368_010 Hb_000424_230 Hb_000424_230 Hb_005271_080--Hb_000424_230 Hb_001689_020 Hb_001689_020 Hb_005271_080--Hb_001689_020 Hb_000197_210 Hb_000197_210 Hb_005271_080--Hb_000197_210 Hb_000261_520 Hb_000261_520 Hb_005271_080--Hb_000261_520 Hb_000042_270--Hb_000197_210 Hb_006816_390 Hb_006816_390 Hb_000042_270--Hb_006816_390 Hb_000679_130 Hb_000679_130 Hb_000042_270--Hb_000679_130 Hb_000034_050 Hb_000034_050 Hb_000042_270--Hb_000034_050 Hb_000042_270--Hb_000236_380 Hb_000836_630 Hb_000836_630 Hb_000042_270--Hb_000836_630 Hb_018954_020 Hb_018954_020 Hb_000497_230--Hb_018954_020 Hb_000497_230--Hb_000197_210 Hb_008406_140 Hb_008406_140 Hb_000497_230--Hb_008406_140 Hb_000497_230--Hb_001279_330 Hb_004143_070 Hb_004143_070 Hb_000497_230--Hb_004143_070 Hb_002159_040 Hb_002159_040 Hb_000497_230--Hb_002159_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.7498 6.28148 22.5073 46.2698 93.8245 61.8264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8292 16.2656 46.1854 9.93669 20.0057

CAGE analysis