Hb_000329_390

Information

Type transcription factor
Description TF Family: C2H2
Location Contig329: 235819-243759
Sequence    

Annotation

kegg
ID rcu:RCOM_1610140
description hypothetical protein
nr
ID XP_002511650.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M202
description Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1
trembl
ID B9RD61
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1610140 PE=4 SV=1
Gene Ontology
ID GO:0003700
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34538: 236318-236951 , PASA_asmbl_34539: 242729-243198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_390 0.0 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
2 Hb_014361_100 0.089063975 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
3 Hb_022256_040 0.0933518468 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
4 Hb_001348_050 0.0938546824 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000345_530 0.1141542512 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
6 Hb_011282_030 0.1155838191 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
7 Hb_002997_100 0.1163890386 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
8 Hb_000768_030 0.1184343575 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
9 Hb_001584_290 0.1188171654 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
10 Hb_000481_040 0.1193247769 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
11 Hb_000001_020 0.1215650617 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
12 Hb_002874_070 0.1229740565 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
13 Hb_007786_010 0.124970793 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
14 Hb_009421_100 0.1250260616 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
15 Hb_000923_040 0.1253451685 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
16 Hb_023226_060 0.1253655611 - - unnamed protein product [Vitis vinifera]
17 Hb_182026_010 0.1254829079 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
18 Hb_000034_140 0.1264905563 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
19 Hb_001001_160 0.1269244145 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
20 Hb_000733_060 0.1272192611 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_390 Hb_000329_390 Hb_014361_100 Hb_014361_100 Hb_000329_390--Hb_014361_100 Hb_022256_040 Hb_022256_040 Hb_000329_390--Hb_022256_040 Hb_001348_050 Hb_001348_050 Hb_000329_390--Hb_001348_050 Hb_000345_530 Hb_000345_530 Hb_000329_390--Hb_000345_530 Hb_011282_030 Hb_011282_030 Hb_000329_390--Hb_011282_030 Hb_002997_100 Hb_002997_100 Hb_000329_390--Hb_002997_100 Hb_014361_100--Hb_001348_050 Hb_000236_380 Hb_000236_380 Hb_014361_100--Hb_000236_380 Hb_001584_290 Hb_001584_290 Hb_014361_100--Hb_001584_290 Hb_000322_090 Hb_000322_090 Hb_014361_100--Hb_000322_090 Hb_000042_270 Hb_000042_270 Hb_014361_100--Hb_000042_270 Hb_022256_040--Hb_002997_100 Hb_002874_070 Hb_002874_070 Hb_022256_040--Hb_002874_070 Hb_002631_050 Hb_002631_050 Hb_022256_040--Hb_002631_050 Hb_000733_060 Hb_000733_060 Hb_022256_040--Hb_000733_060 Hb_000230_330 Hb_000230_330 Hb_022256_040--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_022256_040--Hb_001584_110 Hb_001348_050--Hb_000236_380 Hb_000592_080 Hb_000592_080 Hb_001348_050--Hb_000592_080 Hb_140171_010 Hb_140171_010 Hb_001348_050--Hb_140171_010 Hb_007592_030 Hb_007592_030 Hb_001348_050--Hb_007592_030 Hb_000923_040 Hb_000923_040 Hb_000345_530--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_000345_530--Hb_000104_080 Hb_001040_040 Hb_001040_040 Hb_000345_530--Hb_001040_040 Hb_030827_030 Hb_030827_030 Hb_000345_530--Hb_030827_030 Hb_002249_160 Hb_002249_160 Hb_000345_530--Hb_002249_160 Hb_000976_080 Hb_000976_080 Hb_000345_530--Hb_000976_080 Hb_011282_030--Hb_001584_110 Hb_011282_030--Hb_000230_330 Hb_014568_030 Hb_014568_030 Hb_011282_030--Hb_014568_030 Hb_011282_030--Hb_022256_040 Hb_000462_150 Hb_000462_150 Hb_011282_030--Hb_000462_150 Hb_010222_030 Hb_010222_030 Hb_011282_030--Hb_010222_030 Hb_182026_010 Hb_182026_010 Hb_002997_100--Hb_182026_010 Hb_000078_130 Hb_000078_130 Hb_002997_100--Hb_000078_130 Hb_002997_100--Hb_000230_330 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.83301 1.46176 2.83113 2.45473 9.75263 5.92812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29193 1.71035 5.49429 1.66391 1.01582

CAGE analysis