Hb_002687_040

Information

Type -
Description -
Location Contig2687: 95970-99565
Sequence    

Annotation

kegg
ID rcu:RCOM_1454590
description alpha-galactosidase/alpha-n-acetylgalactosaminidase, putative (EC:3.2.1.22)
nr
ID XP_012068538.1
description PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
swissprot
ID Q9FT97
description Alpha-galactosidase 1 OS=Arabidopsis thaliana GN=AGAL1 PE=2 SV=1
trembl
ID A0A067KWC0
description Alpha-galactosidase OS=Jatropha curcas GN=JCGZ_24456 PE=3 SV=1
Gene Ontology
ID GO:0009505
description alpha-galactosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28058: 95956-99539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_040 0.0 - - PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
2 Hb_003683_180 0.1063427616 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001247_170 0.1354218699 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
4 Hb_095831_010 0.1677989289 - - PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
5 Hb_015026_060 0.1713235514 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
6 Hb_005147_060 0.1725310401 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
7 Hb_025814_010 0.1758114144 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
8 Hb_141132_010 0.1850794326 - - Hsc70-interacting protein, putative [Ricinus communis]
9 Hb_000212_320 0.1879335808 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
10 Hb_000343_190 0.1891745556 - - PREDICTED: coatomer subunit beta'-2 isoform X1 [Jatropha curcas]
11 Hb_002508_020 0.1910244508 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
12 Hb_000832_200 0.1915550977 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
13 Hb_004732_020 0.1921348338 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
14 Hb_174541_020 0.1923575541 - - PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]
15 Hb_008103_040 0.1927396808 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
16 Hb_006483_010 0.1933598402 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_001476_140 0.1968523075 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
18 Hb_058643_010 0.1993377015 - - hydrolase, putative [Ricinus communis]
19 Hb_181810_020 0.2006300497 - - -
20 Hb_000021_040 0.2016172623 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002687_040 Hb_002687_040 Hb_003683_180 Hb_003683_180 Hb_002687_040--Hb_003683_180 Hb_001247_170 Hb_001247_170 Hb_002687_040--Hb_001247_170 Hb_095831_010 Hb_095831_010 Hb_002687_040--Hb_095831_010 Hb_015026_060 Hb_015026_060 Hb_002687_040--Hb_015026_060 Hb_005147_060 Hb_005147_060 Hb_002687_040--Hb_005147_060 Hb_025814_010 Hb_025814_010 Hb_002687_040--Hb_025814_010 Hb_003683_180--Hb_005147_060 Hb_141132_010 Hb_141132_010 Hb_003683_180--Hb_141132_010 Hb_008103_040 Hb_008103_040 Hb_003683_180--Hb_008103_040 Hb_004732_020 Hb_004732_020 Hb_003683_180--Hb_004732_020 Hb_009119_040 Hb_009119_040 Hb_003683_180--Hb_009119_040 Hb_001584_370 Hb_001584_370 Hb_001247_170--Hb_001584_370 Hb_014361_100 Hb_014361_100 Hb_001247_170--Hb_014361_100 Hb_005271_080 Hb_005271_080 Hb_001247_170--Hb_005271_080 Hb_000042_270 Hb_000042_270 Hb_001247_170--Hb_000042_270 Hb_000497_230 Hb_000497_230 Hb_001247_170--Hb_000497_230 Hb_002508_010 Hb_002508_010 Hb_095831_010--Hb_002508_010 Hb_005511_060 Hb_005511_060 Hb_095831_010--Hb_005511_060 Hb_095831_010--Hb_001247_170 Hb_000696_350 Hb_000696_350 Hb_095831_010--Hb_000696_350 Hb_095831_010--Hb_003683_180 Hb_083043_010 Hb_083043_010 Hb_015026_060--Hb_083043_010 Hb_000424_230 Hb_000424_230 Hb_015026_060--Hb_000424_230 Hb_001279_330 Hb_001279_330 Hb_015026_060--Hb_001279_330 Hb_000613_100 Hb_000613_100 Hb_015026_060--Hb_000613_100 Hb_005368_010 Hb_005368_010 Hb_015026_060--Hb_005368_010 Hb_001040_120 Hb_001040_120 Hb_015026_060--Hb_001040_120 Hb_005147_060--Hb_004732_020 Hb_005147_060--Hb_008103_040 Hb_005211_100 Hb_005211_100 Hb_005147_060--Hb_005211_100 Hb_004659_020 Hb_004659_020 Hb_005147_060--Hb_004659_020 Hb_058643_010 Hb_058643_010 Hb_005147_060--Hb_058643_010 Hb_001691_120 Hb_001691_120 Hb_005147_060--Hb_001691_120 Hb_000307_200 Hb_000307_200 Hb_025814_010--Hb_000307_200 Hb_000045_070 Hb_000045_070 Hb_025814_010--Hb_000045_070 Hb_150204_010 Hb_150204_010 Hb_025814_010--Hb_150204_010 Hb_007192_080 Hb_007192_080 Hb_025814_010--Hb_007192_080 Hb_003195_060 Hb_003195_060 Hb_025814_010--Hb_003195_060 Hb_025814_010--Hb_000696_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.91466 2.68535 6.69676 23.7049 36.6073 32.8857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.22892 4.35869 20.9107 9.4857 3.5029

CAGE analysis