Hb_000613_100

Information

Type -
Description -
Location Contig613: 78469-83887
Sequence    

Annotation

kegg
ID rcu:RCOM_0691170
description long-chain-fatty-acid CoA ligase, putative (EC:6.2.1.3)
nr
ID XP_012081513.1
description PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
swissprot
ID Q9SJD4
description Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=1 SV=1
trembl
ID A0A067K149
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18525 PE=4 SV=1
Gene Ontology
ID GO:0005783
description long chain acyl- synthetase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51076: 71256-77563 , PASA_asmbl_51077: 78597-83827 , PASA_asmbl_51078: 80730-80903
cDNA
(Sanger)
(ID:Location)		 039_A01.ab1: 77431-77563

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_100 0.0 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
2 Hb_000849_100 0.0878764055 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
3 Hb_006002_030 0.0937707739 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
4 Hb_003716_020 0.0978356577 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
5 Hb_001582_030 0.1013377595 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
6 Hb_002235_320 0.1021896664 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
7 Hb_000261_520 0.1029010655 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
8 Hb_078477_040 0.1049129735 - - nuclear movement protein nudc, putative [Ricinus communis]
9 Hb_007441_070 0.1065673748 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
10 Hb_003018_160 0.1084476453 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
11 Hb_001901_080 0.1103110956 - - PREDICTED: xylose isomerase [Jatropha curcas]
12 Hb_000165_130 0.1122310208 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
13 Hb_011497_010 0.1124925794 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
14 Hb_000213_070 0.1132737283 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
15 Hb_004225_130 0.1135462575 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
16 Hb_000375_030 0.1137465699 - - -
17 Hb_188964_010 0.1145246906 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
18 Hb_011612_010 0.1162814595 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_001575_080 0.1174427076 - - PREDICTED: villin-4-like [Jatropha curcas]
20 Hb_002133_030 0.1178969349 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_100 Hb_000613_100 Hb_000849_100 Hb_000849_100 Hb_000613_100--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_000613_100--Hb_006002_030 Hb_003716_020 Hb_003716_020 Hb_000613_100--Hb_003716_020 Hb_001582_030 Hb_001582_030 Hb_000613_100--Hb_001582_030 Hb_002235_320 Hb_002235_320 Hb_000613_100--Hb_002235_320 Hb_000261_520 Hb_000261_520 Hb_000613_100--Hb_000261_520 Hb_000631_150 Hb_000631_150 Hb_000849_100--Hb_000631_150 Hb_000134_360 Hb_000134_360 Hb_000849_100--Hb_000134_360 Hb_000849_100--Hb_006002_030 Hb_000849_100--Hb_003716_020 Hb_002725_070 Hb_002725_070 Hb_000849_100--Hb_002725_070 Hb_000849_100--Hb_002235_320 Hb_078477_040 Hb_078477_040 Hb_006002_030--Hb_078477_040 Hb_001278_060 Hb_001278_060 Hb_006002_030--Hb_001278_060 Hb_006829_090 Hb_006829_090 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_006002_030--Hb_002235_320 Hb_011497_010 Hb_011497_010 Hb_003716_020--Hb_011497_010 Hb_007668_020 Hb_007668_020 Hb_003716_020--Hb_007668_020 Hb_003581_020 Hb_003581_020 Hb_003716_020--Hb_003581_020 Hb_005000_270 Hb_005000_270 Hb_003716_020--Hb_005000_270 Hb_003716_020--Hb_006002_030 Hb_001582_030--Hb_005000_270 Hb_000212_280 Hb_000212_280 Hb_001582_030--Hb_000212_280 Hb_001582_030--Hb_000134_360 Hb_019871_020 Hb_019871_020 Hb_001582_030--Hb_019871_020 Hb_008528_010 Hb_008528_010 Hb_001582_030--Hb_008528_010 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020 Hb_004225_130 Hb_004225_130 Hb_002235_320--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002235_320--Hb_002883_010 Hb_000239_070 Hb_000239_070 Hb_002235_320--Hb_000239_070 Hb_007416_310 Hb_007416_310 Hb_002235_320--Hb_007416_310 Hb_001019_170 Hb_001019_170 Hb_002235_320--Hb_001019_170 Hb_000755_080 Hb_000755_080 Hb_000261_520--Hb_000755_080 Hb_000375_030 Hb_000375_030 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000640_220 Hb_000640_220 Hb_000261_520--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000261_520--Hb_005895_040 Hb_004376_030 Hb_004376_030 Hb_000261_520--Hb_004376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4957 20.1521 7.30368 16.1856 60.0754 51.529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3905 9.86424 11.023 11.1782 3.40637

CAGE analysis